LdBPK_230500.1 | trypanothione synthetase, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_230500.1OTHER0.9998830.0000270.000090
No Results

  • Fasta :-

    >LdBPK_230500.1 MGCTSSTEAKANEAHSSSARLSRNRVTRPPDRMGTARRLRPAAREEVDFNPENAAGAERL RPFVVTARSSSRVGAVTLHGVCGYTQNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVE FARRWLWVTHRLLLPERSCAYCFSSCTYAYRLKKDPSPTSQRARAAMHGTAAETGAGSPS SFKEVNAATEVKLLGPYTNRDAWEKVPAKFVKQGSLVPPVADSLIVYPMSWGSPWGHIGV ITAVDLDRNCVYVADQNRYFHDWNGKSYSAVFRLDCDKGRFYIRDHESECMGWLTFPTAV EGHDVWCAGDQAPRKACKRQQEAGA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_230500.1.fa Sequence name : LdBPK_230500 Sequence length : 325 VALUES OF COMPUTED PARAMETERS Coef20 : 4.141 CoefTot : -0.026 ChDiff : 11 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.076 0.066 0.579 MesoH : -0.479 0.122 -0.390 0.212 MuHd_075 : 10.337 3.006 1.257 0.738 MuHd_095 : 5.745 4.954 3.365 0.499 MuHd_100 : 6.053 5.250 3.472 0.665 MuHd_105 : 7.201 5.221 2.805 1.294 Hmax_075 : 3.675 -1.900 -0.076 0.324 Hmax_095 : 5.200 0.700 -0.134 0.850 Hmax_100 : 5.200 0.700 -0.134 0.850 Hmax_105 : 10.200 2.500 0.266 1.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9526 0.0474 DFMC : 0.8816 0.1184
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 325 LdBPK_230500.1 MGCTSSTEAKANEAHSSSARLSRNRVTRPPDRMGTARRLRPAAREEVDFNPENAAGAERLRPFVVTARSSSRVGAVTLHG 80 VCGYTQNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVEFARRWLWVTHRLLLPERSCAYCFSSCTYAYRLKKDPSPTS 160 QRARAAMHGTAAETGAGSPSSFKEVNAATEVKLLGPYTNRDAWEKVPAKFVKQGSLVPPVADSLIVYPMSWGSPWGHIGV 240 ITAVDLDRNCVYVADQNRYFHDWNGKSYSAVFRLDCDKGRFYIRDHESECMGWLTFPTAVEGHDVWCAGDQAPRKACKRQ 320 QEAGA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_230500.1 10 TSSTEAK|AN 0.096 . LdBPK_230500.1 20 AHSSSAR|LS 0.095 . LdBPK_230500.1 23 SSARLSR|NR 0.224 . LdBPK_230500.1 25 ARLSRNR|VT 0.087 . LdBPK_230500.1 28 SRNRVTR|PP 0.458 . LdBPK_230500.1 32 VTRPPDR|MG 0.078 . LdBPK_230500.1 37 DRMGTAR|RL 0.129 . LdBPK_230500.1 38 RMGTARR|LR 0.130 . LdBPK_230500.1 40 GTARRLR|PA 0.369 . LdBPK_230500.1 44 RLRPAAR|EE 0.093 . LdBPK_230500.1 59 NAAGAER|LR 0.071 . LdBPK_230500.1 61 AGAERLR|PF 0.074 . LdBPK_230500.1 68 PFVVTAR|SS 0.157 . LdBPK_230500.1 72 TARSSSR|VG 0.095 . LdBPK_230500.1 104 NTWTSTK|NF 0.072 . LdBPK_230500.1 107 TSTKNFR|EG 0.090 . LdBPK_230500.1 123 QCVEFAR|RW 0.093 . LdBPK_230500.1 124 CVEFARR|WL 0.112 . LdBPK_230500.1 131 WLWVTHR|LL 0.086 . LdBPK_230500.1 137 RLLLPER|SC 0.101 . LdBPK_230500.1 151 SCTYAYR|LK 0.077 . LdBPK_230500.1 153 TYAYRLK|KD 0.056 . LdBPK_230500.1 154 YAYRLKK|DP 0.291 . LdBPK_230500.1 162 PSPTSQR|AR 0.086 . LdBPK_230500.1 164 PTSQRAR|AA 0.245 . LdBPK_230500.1 183 GSPSSFK|EV 0.080 . LdBPK_230500.1 192 NAATEVK|LL 0.071 . LdBPK_230500.1 200 LGPYTNR|DA 0.127 . LdBPK_230500.1 205 NRDAWEK|VP 0.061 . LdBPK_230500.1 209 WEKVPAK|FV 0.102 . LdBPK_230500.1 212 VPAKFVK|QG 0.085 . LdBPK_230500.1 248 TAVDLDR|NC 0.082 . LdBPK_230500.1 258 YVADQNR|YF 0.105 . LdBPK_230500.1 266 FHDWNGK|SY 0.089 . LdBPK_230500.1 273 SYSAVFR|LD 0.123 . LdBPK_230500.1 278 FRLDCDK|GR 0.070 . LdBPK_230500.1 280 LDCDKGR|FY 0.105 . LdBPK_230500.1 284 KGRFYIR|DH 0.117 . LdBPK_230500.1 314 AGDQAPR|KA 0.087 . LdBPK_230500.1 315 GDQAPRK|AC 0.100 . LdBPK_230500.1 318 APRKACK|RQ 0.070 . LdBPK_230500.1 319 PRKACKR|QQ 0.244 . ____________________________^_________________

  • Fasta :-

    >LdBPK_230500.1 ATGGGATGCACATCATCCACAGAAGCGAAAGCCAACGAAGCGCATTCGTCCTCAGCTCGT CTATCTCGAAACCGCGTGACGAGGCCTCCCGATCGGATGGGCACGGCGCGCCGTCTGCGT CCGGCCGCGCGTGAAGAAGTCGACTTCAACCCTGAAAACGCCGCCGGTGCAGAGCGCCTC CGCCCGTTCGTCGTCACGGCCCGCAGCAGCAGCCGGGTTGGTGCCGTTACCCTGCATGGT GTCTGTGGCTACACCCAAAACGGCGTGCCTGCGTACAGCAATGGCACCTCGAACACATGG ACAAGCACGAAGAACTTCCGCGAAGGTATCTTTATGGGGTACCAGTGGCAGTGTGTCGAG TTTGCCAGGCGGTGGCTCTGGGTGACGCACCGACTGTTGCTGCCAGAGCGTAGCTGCGCT TACTGCTTTTCTAGCTGCACGTACGCATACCGACTCAAGAAGGACCCATCACCCACCTCG CAGCGGGCACGCGCGGCCATGCACGGGACTGCGGCAGAGACCGGTGCCGGCTCGCCATCG TCCTTCAAGGAAGTGAATGCCGCGACAGAGGTGAAGCTCCTTGGACCGTACACGAACAGA GACGCCTGGGAAAAGGTGCCCGCCAAGTTCGTGAAGCAAGGCTCACTGGTGCCTCCGGTG GCGGACAGCTTGATTGTCTACCCGATGAGCTGGGGCAGCCCGTGGGGACACATCGGTGTC ATCACCGCCGTTGACCTGGATCGAAACTGTGTCTACGTTGCTGATCAAAACCGCTACTTT CACGACTGGAACGGCAAGTCGTACAGCGCCGTCTTTCGGCTGGACTGCGACAAGGGTCGA TTCTACATACGCGACCACGAGAGCGAGTGCATGGGGTGGCTGACATTTCCAACCGCGGTG GAGGGGCACGACGTGTGGTGTGCAGGTGACCAGGCGCCACGGAAGGCATGCAAGCGACAG CAAGAAGCGGGGGCTTAA
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  • Fasta :-

    MGCTSSTEAKANEAHSSSARLSRNRVTRPPDRMGTARRLRPAAREEVDFNPENAAGAERL RPFVVTARSSSRVGAVTLHGVCGYTQNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVE FARRWLWVTHRLLLPERSCAYCFSSCTYAYRLKKDPSPTSQRARAAMHGTAAETGAGSPS SFKEVNAATEVKLLGPYTNRDAWEKVPAKFVKQGSLVPPVADSLIVYPMSWGSPWGHIGV ITAVDLDRNCVYVADQNRYFHDWNGKSYSAVFRLDCDKGRFYIRDHESECMGWLTFPTAV EGHDVWCAGDQAPRKACKRQQEAGA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_230500.171 SARSSSRVGA0.994unspLdBPK_230500.1157 SKKDPSPTSQ0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India