LdBPK_240420.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_240420.1OTHER0.9999600.0000360.000005
No Results

  • Fasta :-

    >LdBPK_240420.1 MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYGLVLLFKWQS SEQAPPLGTVVKDAPVFFAKQVIHNACATLAIINTLCNYSDQVELGPKVQRYLSFCQELD PEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVYHFASFVYRHGHIWELDGLQE GPLQCREATEANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA ALQAEEKPTTALDEELAEMLSLRKKDKEANVRRRHDYNAMIVALLKSLAERGKLEKIVAE VQAKASK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_240420.1.fa Sequence name : LdBPK_240420 Sequence length : 307 VALUES OF COMPUTED PARAMETERS Coef20 : 3.778 CoefTot : -0.141 ChDiff : -15 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 1.294 0.068 0.499 MesoH : -0.267 0.513 -0.334 0.288 MuHd_075 : 8.350 6.112 2.068 1.432 MuHd_095 : 15.936 9.168 5.232 2.048 MuHd_100 : 15.160 7.582 5.654 1.049 MuHd_105 : 13.998 6.169 5.533 1.458 Hmax_075 : 2.200 5.017 -0.462 2.730 Hmax_095 : 3.150 5.775 0.512 2.231 Hmax_100 : 10.000 9.100 2.728 2.870 Hmax_105 : 10.800 9.900 3.060 2.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9588 0.0412 DFMC : 0.9483 0.0517
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 307 LdBPK_240420.1 MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYGLVLLFKWQSSEQAPPLGTVVKDAPVFFAK 80 QVIHNACATLAIINTLCNYSDQVELGPKVQRYLSFCQELDPEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVY 160 HFASFVYRHGHIWELDGLQEGPLQCREATEANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA 240 ALQAEEKPTTALDEELAEMLSLRKKDKEANVRRRHDYNAMIVALLKSLAERGKLEKIVAEVQAKASK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_240420.1 7 MPSDESR|WC 0.096 . LdBPK_240420.1 19 SDPAVFR|EI 0.102 . LdBPK_240420.1 28 IQTVGVK|GV 0.079 . LdBPK_240420.1 57 GLVLLFK|WQ 0.066 . LdBPK_240420.1 72 PLGTVVK|DA 0.077 . LdBPK_240420.1 80 APVFFAK|QV 0.096 . LdBPK_240420.1 108 QVELGPK|VQ 0.051 . LdBPK_240420.1 111 LGPKVQR|YL 0.102 . LdBPK_240420.1 124 ELDPEMR|GS 0.067 . LdBPK_240420.1 135 DSFDELR|EA 0.099 . LdBPK_240420.1 149 PHSAFTK|DG 0.067 . LdBPK_240420.1 155 KDGPSPK|DA 0.110 . LdBPK_240420.1 168 FASFVYR|HG 0.133 . LdBPK_240420.1 186 EGPLQCR|EA 0.086 . LdBPK_240420.1 194 ATEANYR|EA 0.083 . LdBPK_240420.1 203 LVEVVQR|RI 0.097 . LdBPK_240420.1 204 VEVVQRR|ID 0.147 . LdBPK_240420.1 211 IDDIAAK|DT 0.089 . LdBPK_240420.1 237 PVTVLEK|KI 0.058 . LdBPK_240420.1 238 VTVLEKK|IA 0.083 . LdBPK_240420.1 247 ALQAEEK|PT 0.067 . LdBPK_240420.1 263 AEMLSLR|KK 0.094 . LdBPK_240420.1 264 EMLSLRK|KD 0.059 . LdBPK_240420.1 265 MLSLRKK|DK 0.198 . LdBPK_240420.1 267 SLRKKDK|EA 0.085 . LdBPK_240420.1 272 DKEANVR|RR 0.084 . LdBPK_240420.1 273 KEANVRR|RH 0.143 . LdBPK_240420.1 274 EANVRRR|HD 0.161 . LdBPK_240420.1 286 MIVALLK|SL 0.072 . LdBPK_240420.1 291 LKSLAER|GK 0.108 . LdBPK_240420.1 293 SLAERGK|LE 0.063 . LdBPK_240420.1 296 ERGKLEK|IV 0.083 . LdBPK_240420.1 304 VAEVQAK|AS 0.067 . LdBPK_240420.1 307 VQAKASK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >LdBPK_240420.1 ATGCCCAGCGACGAGAGCCGGTGGTGCTTAATCGAGAGCGATCCGGCGGTGTTCAGGGAG ATCATCCAAACCGTCGGTGTGAAGGGGGTCTCCGTGGAGGACCTCATTATGCTTGACTCC TCGATGCTGGAGCAGTACGAGCACGTCTACGGCCTTGTGTTGCTGTTCAAGTGGCAGTCG TCGGAGCAGGCGCCGCCGCTCGGCACCGTCGTGAAGGACGCGCCGGTGTTCTTCGCCAAG CAGGTGATACACAACGCCTGCGCCACGCTCGCCATCATAAACACGCTGTGCAACTACTCG GATCAGGTGGAGCTGGGGCCAAAGGTGCAGAGATACCTGAGCTTCTGCCAGGAGCTCGAC CCGGAAATGCGCGGCTCGCTTCTGGACAGCTTCGATGAGCTGCGCGAGGCACACAACTCC TTCGCACCACACTCGGCGTTTACGAAAGACGGGCCGTCGCCAAAGGACGCGGATGTGTAT CATTTCGCCTCCTTTGTATACCGCCACGGACACATCTGGGAGCTCGATGGGCTGCAGGAG GGCCCGCTGCAGTGCCGCGAGGCGACGGAGGCGAACTATCGAGAGGCGCTCGTGGAGGTC GTGCAGCGGCGCATCGACGACATTGCAGCGAAGGACACGACGGGTGCCGGTCAGGGCATC TCCTTCTCGCTTATGACGATTGTGGACGACCCGGTCACGGTGTTGGAGAAGAAGATTGCC GCTCTCCAGGCCGAGGAAAAGCCGACGACGGCGCTCGACGAAGAGCTGGCCGAGATGCTG TCACTGCGCAAGAAGGACAAAGAGGCTAACGTGCGTCGCCGTCATGACTACAATGCCATG ATCGTGGCGCTGCTGAAGTCCCTGGCGGAGCGTGGCAAACTGGAGAAGATCGTGGCGGAG GTGCAGGCGAAGGCCTCCAAGTAG
  • Download Fasta

  • Fasta :-

    MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYGLVLLFKWQS SEQAPPLGTVVKDAPVFFAKQVIHNACATLAIINTLCNYSDQVELGPKVQRYLSFCQELD PEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVYHFASFVYRHGHIWELDGLQE GPLQCREATEANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA ALQAEEKPTTALDEELAEMLSLRKKDKEANVRRRHDYNAMIVALLKSLAERGKLEKIVAE VQAKASK

  • title: catalytic site
  • coordinates: Q81,C87,H161,D176
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_240420.1153 SKDGPSPKDA0.998unspLdBPK_240420.1153 SKDGPSPKDA0.998unspLdBPK_240420.1153 SKDGPSPKDA0.998unspLdBPK_240420.131 SVKGVSVEDL0.997unspLdBPK_240420.1126 SEMRGSLLDS0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India