LdBPK_250190.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_250190.1OTHER0.9990970.0002550.000648
No Results

  • Fasta :-

    >LdBPK_250190.1 MWFPLESNPQVMNRYISTLGLTEAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATD RRLAEQQAAQTAEVAALRKSHPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILD GPWAKAAETSEDPQIIGKLIAEDTSLASAHAAAAQEGATANQHIDADIDLHFVCFIPVGG RCVELDGRKENPILHGTCTDNRSFLTAAAAAIQERVELNPSSYEFGITALVNK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_250190.1.fa Sequence name : LdBPK_250190 Sequence length : 233 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.844 ChDiff : -13 ZoneTo : 22 KR : 1 DE : 1 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.129 1.300 0.033 0.551 MesoH : -0.522 0.335 -0.384 0.228 MuHd_075 : 21.669 17.222 5.243 5.590 MuHd_095 : 26.373 17.887 7.345 6.593 MuHd_100 : 24.006 16.366 6.164 6.145 MuHd_105 : 20.703 15.039 4.843 6.427 Hmax_075 : 15.900 14.933 2.582 4.790 Hmax_095 : 6.913 8.000 -0.374 3.780 Hmax_100 : 8.100 8.000 -0.472 4.060 Hmax_105 : 7.438 12.950 1.769 4.069 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8275 0.1725 DFMC : 0.8854 0.1146
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 233 LdBPK_250190.1 MWFPLESNPQVMNRYISTLGLTEAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATDRRLAEQQAAQTAEVAALRKS 80 HPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILDGPWAKAAETSEDPQIIGKLIAEDTSLASAHAAAAQEGATA 160 NQHIDADIDLHFVCFIPVGGRCVELDGRKENPILHGTCTDNRSFLTAAAAAIQERVELNPSSYEFGITALVNK 240 ................................................................................ 80 ................................................................................ 160 ......................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_250190.1 14 NPQVMNR|YI 0.194 . LdBPK_250190.1 25 LGLTEAK|VQ 0.058 . LdBPK_250190.1 61 MCEATDR|RL 0.087 . LdBPK_250190.1 62 CEATDRR|LA 0.252 . LdBPK_250190.1 78 AEVAALR|KS 0.090 . LdBPK_250190.1 79 EVAALRK|SH 0.087 . LdBPK_250190.1 107 HALMNNR|DK 0.092 . LdBPK_250190.1 109 LMNNRDK|LG 0.072 . LdBPK_250190.1 125 LDGPWAK|AA 0.106 . LdBPK_250190.1 138 DPQIIGK|LI 0.062 . LdBPK_250190.1 181 FIPVGGR|CV 0.091 . LdBPK_250190.1 188 CVELDGR|KE 0.080 . LdBPK_250190.1 189 VELDGRK|EN 0.062 . LdBPK_250190.1 202 GTCTDNR|SF 0.102 . LdBPK_250190.1 215 AAAIQER|VE 0.065 . LdBPK_250190.1 233 ITALVNK|-- 0.068 . ____________________________^_________________

  • Fasta :-

    >LdBPK_250190.1 ATGTGGTTCCCACTGGAGAGCAATCCGCAGGTGATGAACCGCTACATCAGCACCTTGGGT CTCACAGAAGCGAAGGTGCAGTTTGTGGACGTGTACGGTGTGTCGGACGATCTACTTGAA ATGGTGCCTTCGCCGGTGCATGCCGTGCTCCTCGTGTACCCCATGTGCGAGGCCACGGAT AGACGCCTAGCGGAGCAGCAGGCTGCACAGACAGCGGAAGTTGCGGCGCTTCGCAAATCA CACCCTTTCTTCTTCACACACCAGCTCGTCCCGAACGCGTGCGGAACCATCGCCATCGCG CATGCTCTTATGAACAACCGCGATAAGCTCGGTGAGATCGCCGCCGGCAGCATCCTCGAC GGCCCGTGGGCGAAGGCGGCAGAAACGTCGGAAGATCCCCAGATCATCGGAAAACTTATT GCGGAAGACACGAGTCTCGCCAGCGCTCACGCCGCTGCTGCGCAGGAGGGCGCGACCGCC AACCAACACATCGACGCGGACATCGACCTTCACTTTGTCTGCTTCATCCCCGTAGGCGGA CGCTGCGTTGAGCTGGATGGGCGAAAAGAGAACCCGATCTTGCACGGTACCTGCACCGAC AACAGGTCTTTCCTCACCGCTGCAGCCGCCGCGATACAGGAACGCGTAGAGCTCAACCCC AGCTCCTACGAGTTTGGCATCACCGCACTCGTGAACAAGTGA
  • Download Fasta

  • Fasta :-

    MWFPLESNPQVMNRYISTLGLTEAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATD RRLAEQQAAQTAEVAALRKSHPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILD GPWAKAAETSEDPQIIGKLIAEDTSLASAHAAAAQEGATANQHIDADIDLHFVCFIPVGG RCVELDGRKENPILHGTCTDNRSFLTAAAAAIQERVELNPSSYEFGITALVNK

  • title: catalytic site
  • coordinates: Q88,C94,H171,D186
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India