LdBPK_262720.1 | CAAX prenyl protease 2, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_262720.1OTHER0.6102990.2848220.104879
No Results

  • Fasta :-

    >LdBPK_262720.1 MCCLVSGTYLAFGTAPPRTVQRQSTLLRPVIRSSVSTLLLFAGPIAEACHLGTFDTPEST FLLWRNYVICPIGEELFYRGVLFSLLHRRSSAARIFVSAFLFSLSHIHHLVSMACDAYRN CEDKGVAGNDRDEKERACWRSAGHAMCGIFVFTALFGLLSGYYYEHVCERSIIAIAAAHA LCNAIGPPEFTVLRSRHFTAREKVASAAIYVAGIVGWAWTLLRY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_262720.1.fa Sequence name : LdBPK_262720 Sequence length : 224 VALUES OF COMPUTED PARAMETERS Coef20 : 4.180 CoefTot : 0.289 ChDiff : 5 ZoneTo : 46 KR : 4 DE : 0 CleavSite : 34 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.271 1.988 0.447 0.752 MesoH : 0.068 0.758 -0.141 0.337 MuHd_075 : 49.811 28.228 11.384 11.603 MuHd_095 : 31.893 24.664 7.522 8.227 MuHd_100 : 43.568 26.322 10.232 10.698 MuHd_105 : 47.510 25.736 10.537 11.427 Hmax_075 : 10.800 16.700 1.860 4.900 Hmax_095 : 17.500 17.500 1.523 6.510 Hmax_100 : 8.800 11.700 1.020 3.920 Hmax_105 : 8.500 11.000 0.672 5.413 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0408 0.9592 DFMC : 0.0358 0.9642 This protein is probably imported in mitochondria. f(Ser) = 0.1087 f(Arg) = 0.0870 CMi = 0.56689 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 224 LdBPK_262720.1 MCCLVSGTYLAFGTAPPRTVQRQSTLLRPVIRSSVSTLLLFAGPIAEACHLGTFDTPESTFLLWRNYVICPIGEELFYRG 80 VLFSLLHRRSSAARIFVSAFLFSLSHIHHLVSMACDAYRNCEDKGVAGNDRDEKERACWRSAGHAMCGIFVFTALFGLLS 160 GYYYEHVCERSIIAIAAAHALCNAIGPPEFTVLRSRHFTAREKVASAAIYVAGIVGWAWTLLRY 240 ................................................................................ 80 ................................................................................ 160 ................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_262720.1 18 FGTAPPR|TV 0.090 . LdBPK_262720.1 22 PPRTVQR|QS 0.101 . LdBPK_262720.1 28 RQSTLLR|PV 0.131 . LdBPK_262720.1 32 LLRPVIR|SS 0.129 . LdBPK_262720.1 65 STFLLWR|NY 0.075 . LdBPK_262720.1 79 GEELFYR|GV 0.132 . LdBPK_262720.1 88 LFSLLHR|RS 0.094 . LdBPK_262720.1 89 FSLLHRR|SS 0.189 . LdBPK_262720.1 94 RRSSAAR|IF 0.123 . LdBPK_262720.1 119 MACDAYR|NC 0.118 . LdBPK_262720.1 124 YRNCEDK|GV 0.106 . LdBPK_262720.1 131 GVAGNDR|DE 0.084 . LdBPK_262720.1 134 GNDRDEK|ER 0.092 . LdBPK_262720.1 136 DRDEKER|AC 0.099 . LdBPK_262720.1 140 KERACWR|SA 0.261 . LdBPK_262720.1 170 YEHVCER|SI 0.177 . LdBPK_262720.1 194 PEFTVLR|SR 0.089 . LdBPK_262720.1 196 FTVLRSR|HF 0.087 . LdBPK_262720.1 201 SRHFTAR|EK 0.158 . LdBPK_262720.1 203 HFTAREK|VA 0.067 . LdBPK_262720.1 223 WAWTLLR|Y- 0.090 . ____________________________^_________________

  • Fasta :-

    >LdBPK_262720.1 ATGTGCTGCCTTGTCAGTGGTACCTACCTTGCATTCGGTACGGCGCCGCCTCGTACCGTC CAGCGGCAGAGCACTTTGCTGCGCCCGGTCATCCGTTCTTCCGTGTCGACACTGCTGCTG TTTGCGGGACCCATCGCGGAGGCGTGTCACCTCGGCACCTTCGACACACCGGAGAGCACA TTCCTGTTATGGCGAAACTATGTGATCTGCCCGATTGGGGAAGAGCTGTTCTATCGCGGC GTTCTCTTCTCGCTTCTGCACCGCCGTTCCTCTGCAGCACGCATTTTCGTTTCTGCCTTC CTCTTTTCGCTTTCCCACATTCACCACCTTGTCTCTATGGCATGTGACGCGTACAGAAAC TGCGAGGACAAAGGCGTGGCTGGTAACGACCGCGACGAGAAAGAGCGTGCGTGCTGGCGC TCAGCGGGGCACGCCATGTGCGGCATCTTTGTCTTTACCGCGCTATTCGGCCTTTTGAGC GGGTACTATTATGAGCATGTGTGTGAGCGTAGCATAATCGCCATCGCTGCAGCCCACGCC CTGTGCAACGCCATTGGCCCTCCAGAGTTCACAGTACTGCGGAGCCGTCATTTCACTGCA AGAGAGAAGGTGGCAAGCGCAGCGATCTATGTCGCTGGTATTGTAGGGTGGGCTTGGACG CTGCTGCGCTACTGA
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  • Fasta :-

    MCCLVSGTYLAFGTAPPRTVQRQSTLLRPVIRSSVSTLLLFAGPIAEACHLGTFDTPEST FLLWRNYVICPIGEELFYRGVLFSLLHRRSSAARIFVSAFLFSLSHIHHLVSMACDAYRN CEDKGVAGNDRDEKERACWRSAGHAMCGIFVFTALFGLLSGYYYEHVCERSIIAIAAAHA LCNAIGPPEFTVLRSRHFTAREKVASAAIYVAGIVGWAWTLLRY

    No Results
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IDSitePeptideScoreMethod
LdBPK_262720.191 SHRRSSAARI0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India