LdBPK_290860.1 | cysteine peptidase C (CPC)

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_290860.1SP0.0044400.9954980.000062CS pos: 25-26. VSG-LY. Pr: 0.6103
No Results

  • Fasta :-

    >LdBPK_290860.1 MALRAKSALCLVAVFAVLLATTVSGLYAKPSDFPLLGKSFVAEINSKARGQWTASADNGY LVSGKSLEEVRKLMGVTDMSTEAVPPRNFSVDEMQQDLPEFFDAAEHWPMCVTISEIRDQ SNCGSCWAIAAVEAISDRYCTLGGVPDRRISTSNLLSCCFICGFGCYGGIPTMAWLWWVW VGITTEVCQPYPFGPCSHHGNSDKYPPCPNTIYDTPKCNTTCEKSEMDLVKYKGGTSYSV KGEKELMIELMTNGPLEVTMQVYSDFVGYKSGVYKHVSGDLLGGHAVKLVGWGTQGGVPY WKIANSWNTDWGDKGYFLIQRGSNECGIESGGVAGTPAQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_290860.1.fa Sequence name : LdBPK_290860 Sequence length : 340 VALUES OF COMPUTED PARAMETERS Coef20 : 5.230 CoefTot : 1.304 ChDiff : -8 ZoneTo : 31 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.159 2.488 0.644 0.735 MesoH : 0.365 0.626 0.013 0.333 MuHd_075 : 12.465 13.861 4.324 3.926 MuHd_095 : 13.119 10.891 3.206 3.915 MuHd_100 : 13.356 9.201 2.636 3.676 MuHd_105 : 13.602 8.978 2.699 3.483 Hmax_075 : 19.250 26.017 5.970 7.140 Hmax_095 : 16.888 22.488 3.655 6.527 Hmax_100 : 17.700 22.400 3.299 6.840 Hmax_105 : 16.713 20.738 4.292 6.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9440 0.0560 DFMC : 0.9322 0.0678
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 340 LdBPK_290860.1 MALRAKSALCLVAVFAVLLATTVSGLYAKPSDFPLLGKSFVAEINSKARGQWTASADNGYLVSGKSLEEVRKLMGVTDMS 80 TEAVPPRNFSVDEMQQDLPEFFDAAEHWPMCVTISEIRDQSNCGSCWAIAAVEAISDRYCTLGGVPDRRISTSNLLSCCF 160 ICGFGCYGGIPTMAWLWWVWVGITTEVCQPYPFGPCSHHGNSDKYPPCPNTIYDTPKCNTTCEKSEMDLVKYKGGTSYSV 240 KGEKELMIELMTNGPLEVTMQVYSDFVGYKSGVYKHVSGDLLGGHAVKLVGWGTQGGVPYWKIANSWNTDWGDKGYFLIQ 320 RGSNECGIESGGVAGTPAQE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_290860.1 4 ---MALR|AK 0.080 . LdBPK_290860.1 6 -MALRAK|SA 0.085 . LdBPK_290860.1 29 VSGLYAK|PS 0.064 . LdBPK_290860.1 38 DFPLLGK|SF 0.072 . LdBPK_290860.1 47 VAEINSK|AR 0.065 . LdBPK_290860.1 49 EINSKAR|GQ 0.114 . LdBPK_290860.1 65 GYLVSGK|SL 0.101 . LdBPK_290860.1 71 KSLEEVR|KL 0.099 . LdBPK_290860.1 72 SLEEVRK|LM 0.088 . LdBPK_290860.1 87 TEAVPPR|NF 0.150 . LdBPK_290860.1 118 VTISEIR|DQ 0.094 . LdBPK_290860.1 138 VEAISDR|YC 0.095 . LdBPK_290860.1 148 LGGVPDR|RI 0.101 . LdBPK_290860.1 149 GGVPDRR|IS 0.119 . LdBPK_290860.1 204 HHGNSDK|YP 0.062 . LdBPK_290860.1 217 TIYDTPK|CN 0.088 . LdBPK_290860.1 224 CNTTCEK|SE 0.072 . LdBPK_290860.1 231 SEMDLVK|YK 0.081 . LdBPK_290860.1 233 MDLVKYK|GG 0.064 . LdBPK_290860.1 241 GTSYSVK|GE 0.068 . LdBPK_290860.1 244 YSVKGEK|EL 0.069 . LdBPK_290860.1 270 SDFVGYK|SG 0.072 . LdBPK_290860.1 275 YKSGVYK|HV 0.136 . LdBPK_290860.1 288 LGGHAVK|LV 0.096 . LdBPK_290860.1 302 GGVPYWK|IA 0.068 . LdBPK_290860.1 314 NTDWGDK|GY 0.062 . LdBPK_290860.1 321 GYFLIQR|GS 0.084 . ____________________________^_________________

  • Fasta :-

    >LdBPK_290860.1 ATGGCCCTCCGCGCCAAGTCTGCGCTGTGCCTGGTGGCCGTGTTTGCCGTGTTGCTGGCC ACCACGGTGAGCGGCCTCTACGCCAAGCCGAGTGACTTTCCGCTTCTCGGCAAGAGTTTT GTGGCGGAGATCAACTCAAAGGCGAGGGGTCAGTGGACCGCCTCGGCCGATAATGGCTAC CTGGTCAGCGGCAAGAGCCTCGAGGAGGTGCGCAAGCTGATGGGTGTGACCGACATGAGC ACCGAGGCTGTTCCTCCCCGCAACTTCTCTGTGGATGAAATGCAGCAAGACCTGCCAGAG TTCTTCGACGCCGCCGAGCACTGGCCCATGTGCGTGACAATCAGCGAGATCCGTGACCAA TCGAACTGCGGCTCGTGCTGGGCCATCGCCGCGGTGGAGGCTATTTCGGACCGCTACTGC ACCCTCGGTGGCGTTCCGGATCGCCGCATATCGACCAGCAACCTTCTCTCCTGCTGCTTC ATATGCGGCTTTGGCTGCTACGGCGGCATTCCGACGATGGCGTGGCTGTGGTGGGTGTGG GTGGGCATAACGACGGAGGTCTGCCAGCCCTACCCCTTTGGCCCATGCAGCCATCACGGG AACAGCGACAAGTACCCGCCCTGCCCGAACACCATCTACGATACCCCTAAATGCAATACC ACCTGCGAGAAAAGCGAGATGGATCTGGTCAAGTACAAGGGCGGCACATCTTACTCCGTC AAAGGCGAGAAGGAGCTCATGATCGAGCTCATGACCAACGGCCCCTTGGAGGTGACCATG CAGGTGTACTCCGACTTCGTCGGCTACAAGAGTGGAGTGTACAAGCACGTCTCTGGTGAC CTTCTCGGTGGACACGCCGTAAAACTGGTCGGCTGGGGAACCCAAGGCGGTGTCCCGTAC TGGAAGATCGCCAACAGCTGGAACACCGACTGGGGTGACAAAGGCTACTTCCTGATCCAG CGCGGCAGCAATGAGTGCGGTATTGAGAGCGGCGGCGTTGCTGGCACACCCGCGCAGGAG TAG
  • Download Fasta

  • Fasta :-

    MALRAKSALCLVAVFAVLLATTVSGLYAKPSDFPLLGKSFVAEINSKARGQWTASADNGY LVSGKSLEEVRKLMGVTDMSTEAVPPRNFSVDEMQQDLPEFFDAAEHWPMCVTISEIRDQ SNCGSCWAIAAVEAISDRYCTLGGVPDRRISTSNLLSCCFICGFGCYGGIPTMAWLWWVW VGITTEVCQPYPFGPCSHHGNSDKYPPCPNTIYDTPKCNTTCEKSEMDLVKYKGGTSYSV KGEKELMIELMTNGPLEVTMQVYSDFVGYKSGVYKHVSGDLLGGHAVKLVGWGTQGGVPY WKIANSWNTDWGDKGYFLIQRGSNECGIESGGVAGTPAQE

  • title: active site
  • coordinates: Q120,C126,H285,N305
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_290860.1225 STCEKSEMDL0.995unspLdBPK_290860.1225 STCEKSEMDL0.995unspLdBPK_290860.1225 STCEKSEMDL0.995unspLdBPK_290860.166 SVSGKSLEEV0.992unspLdBPK_290860.1151 SDRRISTSNL0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India