LdBPK_291680.1 | glutamamyl carboxypeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_291680.1OTHER0.9992320.0005170.000251
No Results

  • Fasta :-

    >LdBPK_291680.1 MSYPETFREWLAKIISFDTTSRNSNLPMVEYVRDYLRSVGVASTFVYNPEKTHANLWATL PGENGAMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLRMNRVKPVHYAFSFDEEVGCTGVPYLIEYLKAHGFLADACLIGEPTDMNVYVGSKG FTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC ITTGLIKGGNAVNTVPAQCEFVVTARITDNETPDAIERRVRSYVNDHVLPAMREEYPDAE VKVTRPLSMPAFNGKEAASVTQKALMLRKATRTYKTGGGTEGGYFEDVLGVSTVIVGPGP QAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_291680.1.fa Sequence name : LdBPK_291680 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.116 CoefTot : -0.298 ChDiff : -7 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.365 1.288 0.159 0.552 MesoH : -0.102 0.458 -0.267 0.274 MuHd_075 : 43.007 19.434 9.830 6.648 MuHd_095 : 21.374 15.122 7.042 5.742 MuHd_100 : 20.408 14.903 5.507 5.776 MuHd_105 : 23.715 14.962 4.772 5.658 Hmax_075 : 15.400 9.450 1.423 4.037 Hmax_095 : 5.163 9.900 -0.148 5.270 Hmax_100 : 5.300 9.200 -0.148 5.070 Hmax_105 : 14.300 10.700 0.736 6.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5769 0.4231 DFMC : 0.7230 0.2770
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LdBPK_291680.1 MSYPETFREWLAKIISFDTTSRNSNLPMVEYVRDYLRSVGVASTFVYNPEKTHANLWATLPGENGAMQGGIVLSGHTDVV 80 PVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALTPQFLRMNRVKPVHYAFSFDEEVGCTGVPYLIEYLKAHGFL 160 ADACLIGEPTDMNVYVGSKGFTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC 240 ITTGLIKGGNAVNTVPAQCEFVVTARITDNETPDAIERRVRSYVNDHVLPAMREEYPDAEVKVTRPLSMPAFNGKEAASV 320 TQKALMLRKATRTYKTGGGTEGGYFEDVLGVSTVIVGPGPQAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGN 400 L 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_291680.1 8 SYPETFR|EW 0.083 . LdBPK_291680.1 13 FREWLAK|II 0.083 . LdBPK_291680.1 22 SFDTTSR|NS 0.065 . LdBPK_291680.1 33 PMVEYVR|DY 0.081 . LdBPK_291680.1 37 YVRDYLR|SV 0.205 . LdBPK_291680.1 51 FVYNPEK|TH 0.056 . LdBPK_291680.1 86 VPVDGQK|WD 0.067 . LdBPK_291680.1 97 PFTMVEK|DG 0.061 . LdBPK_291680.1 100 MVEKDGK|LF 0.073 . LdBPK_291680.1 104 DGKLFGR|GA 0.138 . LdBPK_291680.1 110 RGACDMK|GF 0.069 . LdBPK_291680.1 125 LTPQFLR|MN 0.077 . LdBPK_291680.1 128 QFLRMNR|VK 0.124 . LdBPK_291680.1 130 LRMNRVK|PV 0.105 . LdBPK_291680.1 155 YLIEYLK|AH 0.060 . LdBPK_291680.1 179 NVYVGSK|GF 0.059 . LdBPK_291680.1 191 SVSVQGK|AI 0.101 . LdBPK_291680.1 216 AAQIITK|VR 0.066 . LdBPK_291680.1 218 QIITKVR|EI 0.089 . LdBPK_291680.1 225 EIAVDLR|KN 0.099 . LdBPK_291680.1 226 IAVDLRK|NG 0.069 . LdBPK_291680.1 229 DLRKNGR|QD 0.079 . LdBPK_291680.1 247 ITTGLIK|GG 0.062 . LdBPK_291680.1 266 EFVVTAR|IT 0.103 . LdBPK_291680.1 278 TPDAIER|RV 0.108 . LdBPK_291680.1 279 PDAIERR|VR 0.154 . LdBPK_291680.1 281 AIERRVR|SY 0.259 . LdBPK_291680.1 293 HVLPAMR|EE 0.068 . LdBPK_291680.1 302 YPDAEVK|VT 0.058 . LdBPK_291680.1 305 AEVKVTR|PL 0.100 . LdBPK_291680.1 315 MPAFNGK|EA 0.077 . LdBPK_291680.1 323 AASVTQK|AL 0.068 . LdBPK_291680.1 328 QKALMLR|KA 0.099 . LdBPK_291680.1 329 KALMLRK|AT 0.085 . LdBPK_291680.1 332 MLRKATR|TY 0.141 . LdBPK_291680.1 335 KATRTYK|TG 0.147 . LdBPK_291680.1 378 LVDQMEK|ST 0.068 . LdBPK_291680.1 388 FTMALVR|LY 0.065 . ____________________________^_________________

  • Fasta :-

    >LdBPK_291680.1 ATGTCCTATCCGGAGACGTTCCGCGAGTGGCTGGCAAAGATCATCAGTTTCGACACGACG AGTCGCAACTCGAACTTGCCGATGGTGGAATACGTGCGCGACTACCTGAGGTCCGTCGGC GTTGCGTCGACGTTCGTATACAACCCGGAGAAGACGCATGCCAACCTGTGGGCGACGCTT CCCGGCGAGAACGGCGCGATGCAGGGCGGCATCGTGCTTTCAGGCCACACGGACGTTGTG CCGGTGGATGGGCAGAAGTGGGACAGCGACCCGTTCACGATGGTGGAGAAGGACGGCAAG CTGTTTGGCCGCGGAGCCTGCGACATGAAGGGCTTCCTGGCCGTTGTGCTGGCGCTGACG CCACAGTTCCTGAGAATGAATCGTGTGAAGCCCGTGCACTACGCCTTCTCATTCGACGAG GAAGTGGGCTGCACCGGCGTGCCGTACTTGATCGAATATCTGAAGGCACATGGGTTCCTG GCGGACGCCTGCCTCATCGGTGAACCGACGGACATGAACGTTTACGTTGGCTCGAAGGGC TTTACTCAGTGGAGCGTATCTGTGCAGGGAAAGGCGATTCACTCGTCGATGGCGCTCATG AACACAAGCTGCAACGCGATCGAGTATGCTGCGCAAATCATCACAAAGGTGCGCGAGATC GCGGTGGACCTGCGCAAGAACGGCCGCCAGGACCCTGAATACGCATGTCCGTTTCCCTGT ATCACGACTGGGTTGATCAAGGGCGGCAATGCTGTGAACACGGTCCCTGCGCAGTGCGAA TTTGTGGTCACTGCGCGCATTACAGACAACGAGACACCGGACGCCATCGAGCGGCGTGTG CGTTCGTACGTGAACGATCACGTGCTGCCTGCAATGCGTGAGGAGTACCCCGATGCTGAG GTAAAGGTGACGCGTCCCTTGAGCATGCCTGCCTTTAACGGCAAAGAAGCTGCTTCTGTG ACGCAGAAAGCCTTGATGCTCCGGAAGGCTACAAGGACGTACAAGACGGGTGGTGGCACG GAGGGCGGCTACTTTGAGGACGTCCTGGGTGTCTCAACGGTGATTGTGGGTCCGGGCCCT CAGGCGATGGCGCATCTGCCGAACGAGTACGTTCTCGTGGACCAGATGGAAAAAAGCACT GAGTTCACGATGGCCCTGGTGCGTCTGTACACGGACCCGAGCTACTGCGGTGCCGGCAAC CTGTAA
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  • Fasta :-

    MSYPETFREWLAKIISFDTTSRNSNLPMVEYVRDYLRSVGVASTFVYNPEKTHANLWATL PGENGAMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLRMNRVKPVHYAFSFDEEVGCTGVPYLIEYLKAHGFLADACLIGEPTDMNVYVGSKG FTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC ITTGLIKGGNAVNTVPAQCEFVVTARITDNETPDAIERRVRSYVNDHVLPAMREEYPDAE VKVTRPLSMPAFNGKEAASVTQKALMLRKATRTYKTGGGTEGGYFEDVLGVSTVIVGPGP QAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL

  • title: metal binding site
  • coordinates: H76,D108,E140,E141,E168,H365
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India