LdBPK_292880.1 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_292880.1OTHER0.9099080.0741100.015982
No Results

  • Fasta :-

    >LdBPK_292880.1 MKPHGLAVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGD FSVLTRPGHWTAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVMESEAEKCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNTRDGSRVSGF IPSRKLVSLFAEMWVEHARVLSSA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_292880.1.fa Sequence name : LdBPK_292880 Sequence length : 204 VALUES OF COMPUTED PARAMETERS Coef20 : 3.458 CoefTot : -1.606 ChDiff : -3 ZoneTo : 55 KR : 4 DE : 1 CleavSite : 57 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.912 1.712 0.396 0.633 MesoH : -0.093 0.478 -0.234 0.279 MuHd_075 : 30.201 24.281 6.278 8.075 MuHd_095 : 26.238 19.565 8.404 6.101 MuHd_100 : 24.837 22.459 8.238 6.877 MuHd_105 : 26.718 25.801 9.121 8.133 Hmax_075 : 20.000 20.400 3.940 7.100 Hmax_095 : 13.100 19.775 2.915 6.000 Hmax_100 : 16.200 19.700 3.881 6.040 Hmax_105 : 15.400 18.300 3.700 6.160 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6296 0.3704 DFMC : 0.6435 0.3565
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 204 LdBPK_292880.1 MKPHGLAVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGDFSVLTRPGHWTAVEYASKDS 80 TYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPPHDAIVSPGVVMESEAEKCVARGTVSMTGSSGAPVVDVFGE 160 HIVGLHLTSNTRDGSRVSGFIPSRKLVSLFAEMWVEHARVLSSA 240 ................................................................................ 80 ................................................................................ 160 ............................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_292880.1 2 -----MK|PH 0.066 . LdBPK_292880.1 21 PSPFLTR|AI 0.088 . LdBPK_292880.1 29 ICALYWK|DT 0.069 . LdBPK_292880.1 55 HHYNAVR|DD 0.097 . LdBPK_292880.1 66 DFSVLTR|PG 0.084 . LdBPK_292880.1 78 AVEYASK|DS 0.064 . LdBPK_292880.1 100 TTHTSLR|GY 0.125 . LdBPK_292880.1 118 TVWLSPK|PP 0.073 . LdBPK_292880.1 137 MESEAEK|CV 0.102 . LdBPK_292880.1 141 AEKCVAR|GT 0.111 . LdBPK_292880.1 172 HLTSNTR|DG 0.085 . LdBPK_292880.1 176 NTRDGSR|VS 0.082 . LdBPK_292880.1 184 SGFIPSR|KL 0.075 . LdBPK_292880.1 185 GFIPSRK|LV 0.104 . LdBPK_292880.1 199 MWVEHAR|VL 0.114 . ____________________________^_________________

  • Fasta :-

    >LdBPK_292880.1 ATGAAGCCACATGGACTCGCTGTGGTGCCATCCATTGTGCAACCCTCGCCGTTCCTCACT CGCGCCATCTGCGCCCTTTACTGGAAAGACACTTTTCTCGGCAGCTGCGTGGCCATCGCC CCGTCCATTGTGATGACTGCGGGTCATCACTACAACGCCGTCCGCGACGATGTCGGCGAC TTCAGCGTTTTGACACGGCCCGGGCACTGGACGGCGGTCGAGTACGCGTCAAAGGATAGC ACATATGACGTTGTGGTGTTCTGGCTCTGCGAGGAAGTGACGACGCACACCTCGCTGCGA GGGTATCTGCCCGCGGTGGGGGCACAGGTGGCGACTGTATGGTTGTCCCCTAAGCCACCA CACGACGCGATTGTGTCGCCAGGCGTCGTGATGGAGAGCGAGGCAGAGAAGTGCGTGGCG CGCGGCACTGTGAGCATGACCGGATCGAGCGGCGCACCTGTGGTGGACGTCTTTGGTGAG CACATTGTCGGTCTCCATCTCACGTCCAACACGCGTGACGGCTCACGTGTGTCTGGGTTC ATACCGTCACGCAAGCTGGTCTCTCTTTTCGCCGAGATGTGGGTCGAGCACGCTCGTGTC TTGTCGTCCGCATAG
  • Download Fasta

  • Fasta :-

    MKPHGLAVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGD FSVLTRPGHWTAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVMESEAEKCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNTRDGSRVSGF IPSRKLVSLFAEMWVEHARVLSSA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_292880.180 SASKDSTYDV0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India