LdBPK_300270.1 | AUT2/APG4/ATG4 cysteine peptidase, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_300270.1OTHER0.9559450.0154690.028587
No Results

  • Fasta :-

    >LdBPK_300270.1 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRRLSLFFDHSAETAPFSIHNMIRSLWN RRAFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTSANGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLSEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVESQRTQRDCDQLSRARPGHADGTFLSPLQTGDNCGMGGTSISEVAPLAHRRTLRVPR KRFKEGEVGTATAAKAERNDGEDEVDTDSWEYLD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_300270.1.fa Sequence name : LdBPK_300270 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.054 CoefTot : -0.055 ChDiff : -7 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 1.724 0.133 0.563 MesoH : -0.299 0.368 -0.298 0.211 MuHd_075 : 18.028 6.958 3.859 2.504 MuHd_095 : 25.048 13.759 3.790 6.250 MuHd_100 : 24.693 15.341 4.983 6.064 MuHd_105 : 31.753 21.611 7.824 7.160 Hmax_075 : 11.783 9.800 0.183 5.355 Hmax_095 : 10.938 11.287 -0.555 5.189 Hmax_100 : 14.600 12.500 1.705 5.310 Hmax_105 : 18.400 14.900 1.572 5.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8121 0.1879 DFMC : 0.8981 0.1019
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 LdBPK_300270.1 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAVTRLIETDQGWGCLLRTSQML 80 LAHFLWVHGRPADRRLSLFFDHSAETAPFSIHNMIRSLWNRRAFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTS 160 ANGCIYADEVQHTFKQGADVVLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH 240 QRTAAALLSEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRFMHVESQRTQRDCDQLSRARP 320 GHADGTFLSPLQTGDNCGMGGTSISEVAPLAHRRTLRVPRKRFKEGEVGTATAAKAERNDGEDEVDTDSWEYLD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_300270.1 3 ----MLR|YV 0.127 . LdBPK_300270.1 26 PLQVVGR|SG 0.192 . LdBPK_300270.1 34 GAAVESR|EE 0.085 . LdBPK_300270.1 39 SREELEK|AL 0.072 . LdBPK_300270.1 51 FLIFTYR|DG 0.115 . LdBPK_300270.1 62 AIPAVTR|LI 0.093 . LdBPK_300270.1 75 GWGCLLR|TS 0.084 . LdBPK_300270.1 90 FLWVHGR|PA 0.127 . LdBPK_300270.1 94 HGRPADR|RL 0.097 . LdBPK_300270.1 95 GRPADRR|LS 0.116 . LdBPK_300270.1 116 SIHNMIR|SL 0.162 . LdBPK_300270.1 121 IRSLWNR|RA 0.196 . LdBPK_300270.1 122 RSLWNRR|AF 0.137 . LdBPK_300270.1 125 WNRRAFK|AE 0.144 . LdBPK_300270.1 139 QGCEAIK|RT 0.062 . LdBPK_300270.1 140 GCEAIKR|TV 0.281 . LdBPK_300270.1 147 TVQGAVK|TE 0.057 . LdBPK_300270.1 154 TEQLQTR|VM 0.077 . LdBPK_300270.1 175 EVQHTFK|QG 0.067 . LdBPK_300270.1 188 LVLASVR|VS 0.077 . LdBPK_300270.1 205 SYLQIEK|LM 0.055 . LdBPK_300270.1 222 VGGVPGR|SY 0.107 . LdBPK_300270.1 242 YLDPHQR|TA 0.098 . LdBPK_300270.1 266 PSVADVR|CV 0.132 . LdBPK_300270.1 272 RCVHWSR|VD 0.074 . LdBPK_300270.1 286 AFAVTTR|DE 0.117 . LdBPK_300270.1 299 EVHLSNR|FM 0.107 . LdBPK_300270.1 307 MHVESQR|TQ 0.086 . LdBPK_300270.1 310 ESQRTQR|DC 0.447 . LdBPK_300270.1 317 DCDQLSR|AR 0.069 . LdBPK_300270.1 319 DQLSRAR|PG 0.079 . LdBPK_300270.1 353 VAPLAHR|RT 0.064 . LdBPK_300270.1 354 APLAHRR|TL 0.130 . LdBPK_300270.1 357 AHRRTLR|VP 0.208 . LdBPK_300270.1 360 RTLRVPR|KR 0.243 . LdBPK_300270.1 361 TLRVPRK|RF 0.119 . LdBPK_300270.1 362 LRVPRKR|FK 0.361 . LdBPK_300270.1 364 VPRKRFK|EG 0.081 . LdBPK_300270.1 375 GTATAAK|AE 0.069 . LdBPK_300270.1 378 TAAKAER|ND 0.123 . ____________________________^_________________

  • Fasta :-

    >LdBPK_300270.1 ATGCTCCGCTACGTGCAAGACTTATGGAGCGCCTTCTTCCCCACGGAGGCGGTCTTTCCA CTCCAAGTCGTCGGCAGGTCTGGCGCTGCCGTAGAATCGCGAGAGGAGTTAGAGAAGGCG CTCACCGACACATTTCTCATCTTCACGTACCGGGACGGCTTCGAGGCGATCCCGGCCGTC ACGCGCCTGATCGAGACAGACCAGGGCTGGGGCTGCCTTCTGCGCACCTCGCAGATGCTT CTGGCTCATTTCTTGTGGGTCCACGGCCGTCCAGCGGATCGCAGACTTTCTCTTTTCTTC GACCACAGTGCCGAGACGGCGCCGTTCTCGATCCACAACATGATCCGAAGTTTATGGAAT CGGCGGGCGTTCAAGGCGGAGTACTGGAGCCCATCGCAGGGCTGCGAGGCCATCAAGCGC ACGGTGCAGGGTGCCGTAAAGACGGAGCAGCTGCAGACGCGCGTGATGGTGGTGACGTCC GCAAACGGGTGCATCTACGCCGACGAGGTGCAGCACACTTTCAAACAGGGGGCGGATGTG GTGCTCGTCTTGGCCTCCGTGCGCGTGAGTGCTGCGGCGCAGCTGACGCAGGAGAGCTAT CTCCAGATAGAAAAACTGATGGAGCAGCCGCAGTGTCTGGGGGTTGTCGGCGGAGTACCA GGACGGAGCTACTACTTCTTTGCTCACAACCAAACACAGCTCTTCTACCTGGACCCGCAC CAGCGAACCGCCGCCGCGCTGCTGAGTGAGGGGCCGTCCGCCGCGGTCTCTGTCACGCCA TCCGTCGCCGATGTGCGTTGTGTGCATTGGTCACGCGTGGACACGTCGCTGTTTCTCGCC TTTGCCGTTACGACACGCGATGAGTGGGCCGCGCTGGAGGTGCATCTCTCTAACAGATTT ATGCACGTCGAATCGCAGCGGACGCAGCGCGACTGCGATCAGCTCAGTCGTGCGCGGCCG GGGCACGCCGACGGCACCTTTTTGTCCCCGCTGCAGACGGGCGATAATTGTGGGATGGGC GGCACGTCAATTTCCGAGGTGGCTCCACTAGCACACCGGCGTACGTTGCGGGTGCCTCGC AAGAGGTTCAAGGAGGGTGAGGTAGGCACTGCCACCGCTGCGAAAGCGGAGAGGAATGAT GGTGAAGACGAGGTTGACACGGACTCGTGGGAGTATCTGGATTGA
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  • Fasta :-

    MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRRLSLFFDHSAETAPFSIHNMIRSLWN RRAFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTSANGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLSEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVESQRTQRDCDQLSRARPGHADGTFLSPLQTGDNCGMGGTSISEVAPLAHRRTLRVPR KRFKEGEVGTATAAKAERNDGEDEVDTDSWEYLD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_300270.133 SAAVESREEL0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India