LdBPK_300800.1 | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_300800.1OTHER0.9998610.0001220.000017
No Results

  • Fasta :-

    >LdBPK_300800.1 MNVLVVAADHSEDIELISIIDVLSRAGIKVTLASVMESKSITLAHGVNVMCDALIGEVSA VEYDAVLLPGGMPGAVHLGNNEALKKILQNARVGKKLYGGICAAPAVALAPMGLLEGVDT VTCYPGFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHSNEMNDVRAIK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_300800.1.fa Sequence name : LdBPK_300800 Sequence length : 196 VALUES OF COMPUTED PARAMETERS Coef20 : 3.912 CoefTot : 0.270 ChDiff : -4 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.771 1.712 0.377 0.677 MesoH : -0.017 0.870 -0.158 0.355 MuHd_075 : 7.209 1.614 0.798 0.449 MuHd_095 : 13.237 2.001 3.251 0.611 MuHd_100 : 22.355 9.215 5.688 2.711 MuHd_105 : 29.845 15.626 7.587 4.536 Hmax_075 : 0.963 9.450 -1.581 3.617 Hmax_095 : 5.075 10.237 -0.098 3.728 Hmax_100 : 10.600 15.200 1.343 5.040 Hmax_105 : 15.200 18.200 2.730 6.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9825 0.0175 DFMC : 0.9613 0.0387
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 196 LdBPK_300800.1 MNVLVVAADHSEDIELISIIDVLSRAGIKVTLASVMESKSITLAHGVNVMCDALIGEVSAVEYDAVLLPGGMPGAVHLGN 80 NEALKKILQNARVGKKLYGGICAAPAVALAPMGLLEGVDTVTCYPGFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYF 160 ALAVVSILKSPDLAERLAKAMLVDHSNEMNDVRAIK 240 ................................................................................ 80 ................................................................................ 160 .................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_300800.1 25 IIDVLSR|AG 0.084 . LdBPK_300800.1 29 LSRAGIK|VT 0.063 . LdBPK_300800.1 39 ASVMESK|SI 0.081 . LdBPK_300800.1 85 GNNEALK|KI 0.069 . LdBPK_300800.1 86 NNEALKK|IL 0.098 . LdBPK_300800.1 92 KILQNAR|VG 0.072 . LdBPK_300800.1 95 QNARVGK|KL 0.230 . LdBPK_300800.1 96 NARVGKK|LY 0.112 . LdBPK_300800.1 130 YPGFEDK|LP 0.063 . LdBPK_300800.1 136 KLPSSVK|YS 0.066 . LdBPK_300800.1 144 STNAVVK|SE 0.078 . LdBPK_300800.1 152 ENCLTSR|GP 0.103 . LdBPK_300800.1 169 AVVSILK|SP 0.069 . LdBPK_300800.1 176 SPDLAER|LA 0.100 . LdBPK_300800.1 179 LAERLAK|AM 0.108 . LdBPK_300800.1 193 NEMNDVR|AI 0.100 . LdBPK_300800.1 196 NDVRAIK|-- 0.130 . ____________________________^_________________

  • Fasta :-

    >LdBPK_300800.1 ATGAATGTTCTTGTCGTCGCGGCTGATCACTCCGAGGACATCGAGCTGATCAGTATTATT GACGTCCTCTCTCGCGCTGGCATCAAGGTCACACTCGCTTCTGTGATGGAGTCGAAGTCC ATTACGCTGGCGCACGGAGTGAATGTGATGTGCGATGCTCTGATTGGAGAAGTCTCTGCA GTTGAATACGACGCAGTGCTCCTTCCCGGTGGCATGCCAGGAGCCGTCCATCTCGGCAAC AACGAAGCGCTGAAGAAGATTCTGCAGAACGCGCGAGTGGGGAAAAAGCTGTACGGCGGA ATCTGTGCTGCTCCCGCCGTCGCCCTTGCTCCTATGGGGCTGCTGGAGGGTGTGGACACC GTCACTTGCTACCCCGGCTTTGAGGATAAGCTGCCCTCTTCTGTTAAGTACTCCACGAAC GCTGTTGTGAAGTCAGAGAACTGTCTCACCAGCCGCGGCCCCGGCACCGCCATCTACTTT GCGCTCGCCGTTGTTTCGATTCTCAAGTCACCTGATCTGGCTGAGAGGCTCGCCAAGGCC ATGCTTGTGGATCACAGTAACGAGATGAACGACGTGCGCGCCATCAAGTAA
  • Download Fasta

  • Fasta :-

    MNVLVVAADHSEDIELISIIDVLSRAGIKVTLASVMESKSITLAHGVNVMCDALIGEVSA VEYDAVLLPGGMPGAVHLGNNEALKKILQNARVGKKLYGGICAAPAVALAPMGLLEGVDT VTCYPGFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHSNEMNDVRAIK

  • title: conserved cys residue
  • coordinates: C102
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_300800.1134 SKLPSSVKYS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India