LdBPK_312060.1 | succinyl-diaminopimelate desuccinylase-like protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0016787      

  • Computed_GO_Functions:  hydrolase activity      

  • Computed_GO_Process_IDs:  GO:0008152      

  • Computed_GO_Processes:  metabolic process      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_312060.1OTHER0.9984010.0005260.001073
No Results

  • Fasta :-

    >LdBPK_312060.1 MSAVWAQVRQTVESEWDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMNA QNVQGLTYDFITADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWADGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAISSLQRHGIPHGRVVITIEAGEESGSPDLGYYMERCK ERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAIGELTVQTLTESMHSGVAGGVVPDTFRI TRDLLSRIEDCKTGEVTIPEAHCEIPPYAAKAAEAMKAVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEAD PPYGAKVTFKSVGAGNGCAAPELKPWLREVLHEGSTEAFGNTYACQGMGGAIPFIGMLID MYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARVVAAHLHNTPK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_312060.1.fa Sequence name : LdBPK_312060 Sequence length : 471 VALUES OF COMPUTED PARAMETERS Coef20 : 4.216 CoefTot : 0.219 ChDiff : -11 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.294 0.268 0.633 MesoH : 0.097 0.355 -0.250 0.327 MuHd_075 : 22.094 6.250 3.288 3.520 MuHd_095 : 25.186 19.542 6.626 6.420 MuHd_100 : 21.447 16.217 4.853 5.143 MuHd_105 : 13.693 10.732 2.693 2.977 Hmax_075 : -1.750 3.500 -3.402 1.700 Hmax_095 : 6.800 9.400 -1.101 4.820 Hmax_100 : 6.800 9.400 -1.101 4.820 Hmax_105 : -2.500 1.400 -3.434 0.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4405 0.5595 DFMC : 0.5374 0.4626
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 471 LdBPK_312060.1 MSAVWAQVRQTVESEWDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMNAQNVQGLTYDFITADGRTPFL 80 LVEIAGTEPTKNTVLMYGHMDKQPPLRPWADGLDPHKAVVRDGKLYGRGGADDGYALFAAVTAISSLQRHGIPHGRVVIT 160 IEAGEESGSPDLGYYMERCKERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAIGELTVQTLTESMHSGVAGGVVPDTFRI 240 TRDLLSRIEDCKTGEVTIPEAHCEIPPYAAKAAEAMKAVPFKEQFAMAAGVATVPGDNVELAIQNFWKPSLTVTGANLPD 320 PQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEADPPYGAKVTFKSVGAGNGCAAPELKPWLREVLHEGSTEAFG 400 NTYACQGMGGAIPFIGMLIDMYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARVVAAHLHNTPK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_312060.1 9 AVWAQVR|QT 0.097 . LdBPK_312060.1 18 VESEWDK|TI 0.070 . LdBPK_312060.1 49 TNGLQEK|AF 0.088 . LdBPK_312060.1 76 FITADGR|TP 0.064 . LdBPK_312060.1 91 AGTEPTK|NT 0.062 . LdBPK_312060.1 102 MYGHMDK|QP 0.055 . LdBPK_312060.1 107 DKQPPLR|PW 0.124 . LdBPK_312060.1 117 DGLDPHK|AV 0.065 . LdBPK_312060.1 121 PHKAVVR|DG 0.093 . LdBPK_312060.1 124 AVVRDGK|LY 0.168 . LdBPK_312060.1 128 DGKLYGR|GG 0.078 . LdBPK_312060.1 149 AISSLQR|HG 0.109 . LdBPK_312060.1 156 HGIPHGR|VV 0.172 . LdBPK_312060.1 178 LGYYMER|CK 0.098 . LdBPK_312060.1 180 YYMERCK|ER 0.059 . LdBPK_312060.1 182 MERCKER|IG 0.100 . LdBPK_312060.1 185 CKERIGK|VD 0.100 . LdBPK_312060.1 209 WLTTSLR|GV 0.144 . LdBPK_312060.1 239 VVPDTFR|IT 0.082 . LdBPK_312060.1 242 DTFRITR|DL 0.191 . LdBPK_312060.1 247 TRDLLSR|IE 0.090 . LdBPK_312060.1 252 SRIEDCK|TG 0.068 . LdBPK_312060.1 271 IPPYAAK|AA 0.082 . LdBPK_312060.1 277 KAAEAMK|AV 0.082 . LdBPK_312060.1 282 MKAVPFK|EQ 0.081 . LdBPK_312060.1 308 AIQNFWK|PS 0.070 . LdBPK_312060.1 329 IAGNVIR|TH 0.106 . LdBPK_312060.1 335 RTHTTVK|LS 0.061 . LdBPK_312060.1 339 TVKLSMR|LP 0.074 . LdBPK_312060.1 345 RLPPLVK|AE 0.058 . LdBPK_312060.1 354 AALQAMK|RI 0.058 . LdBPK_312060.1 355 ALQAMKR|IL 0.216 . LdBPK_312060.1 366 DPPYGAK|VT 0.069 . LdBPK_312060.1 370 GAKVTFK|SV 0.247 . LdBPK_312060.1 384 CAAPELK|PW 0.063 . LdBPK_312060.1 388 ELKPWLR|EV 0.122 . LdBPK_312060.1 452 LHIPYAK|GL 0.076 . LdBPK_312060.1 460 LTYSIAR|VV 0.125 . LdBPK_312060.1 471 HLHNTPK|-- 0.078 . ____________________________^_________________

  • Fasta :-

    >LdBPK_312060.1 ATGTCCGCTGTCTGGGCCCAGGTGAGGCAGACGGTGGAGTCCGAGTGGGATAAGACGATC GTACCGGCTATCTCGGCCTACATCGAGGTGCCGAACCAGAGCCCGCAGTTCGATCCGGAG TGGGCCACCAATGGCCTGCAGGAGAAAGCCTTTGGCATCCTCATTGATTGGATGAATGCG CAGAACGTGCAGGGGCTCACGTACGACTTTATCACCGCGGATGGCCGCACGCCGTTCCTC CTCGTCGAGATCGCCGGCACCGAGCCGACCAAGAACACGGTGCTTATGTACGGCCACATG GACAAGCAGCCGCCTCTCCGCCCGTGGGCGGATGGTCTCGACCCCCACAAGGCGGTCGTG CGCGATGGCAAGCTGTACGGCCGCGGTGGCGCCGATGACGGCTACGCGCTCTTTGCCGCC GTCACCGCCATCTCGTCGCTGCAGCGCCACGGCATCCCGCACGGCCGTGTCGTGATCACG ATCGAGGCCGGCGAGGAGTCCGGCAGCCCGGACCTGGGCTACTACATGGAGCGCTGCAAG GAGCGCATCGGCAAGGTGGACCTCATGGTGTGCCTGGACAGCGGCAGCATGAACTACTCG CAGGTGTGGCTCACGACGTCGCTGCGCGGCGTTGCGATCGGCGAGCTGACGGTGCAGACA CTGACGGAGAGCATGCACAGTGGCGTCGCCGGCGGCGTTGTGCCGGACACGTTCCGCATC ACGCGCGACCTCCTCAGCCGCATCGAGGACTGCAAGACGGGCGAGGTGACGATCCCGGAG GCCCACTGCGAGATCCCGCCCTACGCGGCCAAGGCGGCGGAGGCGATGAAGGCGGTGCCG TTCAAGGAGCAGTTTGCGATGGCGGCGGGCGTGGCGACGGTGCCTGGCGACAACGTCGAG CTGGCGATTCAGAACTTTTGGAAGCCGAGCCTCACCGTGACGGGCGCCAACCTGCCGGAC CCGCAGATCGCCGGCAACGTCATCCGCACCCACACGACGGTGAAGCTTTCCATGCGCCTG CCCCCCCTGGTGAAGGCCGAGGCTGCACTGCAGGCGATGAAGCGCATCCTGGAGGCAGAC CCGCCGTACGGCGCCAAGGTGACCTTCAAGAGCGTGGGCGCCGGCAACGGCTGTGCTGCG CCGGAGCTGAAGCCGTGGCTGCGGGAGGTGCTGCACGAGGGCAGCACCGAGGCCTTCGGC AACACGTACGCGTGCCAGGGCATGGGTGGCGCCATCCCGTTCATCGGCATGCTCATCGAC ATGTATCCAGAGGCGCAGTTTGTCGTGACGGGTCTCCTCGGCCCGCAGAGCAACGCGCAC GGGCCGAACGAGTTCCTGCACATCCCGTACGCTAAGGGGTTGACGTACAGCATCGCGCGC GTCGTGGCGGCGCACCTCCACAACACGCCCAAGTGA
  • Download Fasta

  • Fasta :-

    MSAVWAQVRQTVESEWDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMNA QNVQGLTYDFITADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWADGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAISSLQRHGIPHGRVVITIEAGEESGSPDLGYYMERCK ERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAIGELTVQTLTESMHSGVAGGVVPDTFRI TRDLLSRIEDCKTGEVTIPEAHCEIPPYAAKAAEAMKAVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEAD PPYGAKVTFKSVGAGNGCAAPELKPWLREVLHEGSTEAFGNTYACQGMGGAIPFIGMLID MYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARVVAAHLHNTPK

  • title: metal binding site
  • coordinates: H99,D132,E165,E166,D193,H440
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_312060.1246 SRDLLSRIED0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India