LdBPK_320400.1 | 19S proteasome non-atpase subunit 8

_IDPredictionOTHERSPmTPCS_Position
LdBPK_320400.1OTHER0.9999810.0000180.000001
No Results

  • Fasta :-

    >LdBPK_320400.1 MSNDPKSMKPDPLVASNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_320400.1.fa Sequence name : LdBPK_320400 Sequence length : 359 VALUES OF COMPUTED PARAMETERS Coef20 : 3.260 CoefTot : -0.022 ChDiff : -12 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.159 1.835 0.218 0.598 MesoH : -0.815 0.405 -0.429 0.186 MuHd_075 : 8.631 6.419 2.166 1.510 MuHd_095 : 17.492 5.581 3.790 2.163 MuHd_100 : 17.489 6.095 3.788 2.366 MuHd_105 : 9.602 4.910 2.140 2.143 Hmax_075 : -1.867 0.933 -3.236 1.283 Hmax_095 : -0.600 -1.900 -2.785 1.060 Hmax_100 : -0.200 -1.900 -2.785 1.060 Hmax_105 : -0.200 -1.312 -3.478 0.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9961 0.0039 DFMC : 0.9931 0.0069
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 359 LdBPK_320400.1 MSNDPKSMKPDPLVASNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYARMNTSAVQKKRVAGLLLGRYV 80 RDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMFAMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLN 160 PVYCVVNTDPNNKGVPVRAYTTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL 240 CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATFLAAIARCIGALHGVIMNRRK 320 LARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_320400.1 6 -MSNDPK|SM 0.081 . LdBPK_320400.1 9 NDPKSMK|PD 0.058 . LdBPK_320400.1 28 DDGSDGK|GD 0.068 . LdBPK_320400.1 43 FLPTAGR|VE 0.064 . LdBPK_320400.1 60 LVDHYAR|MN 0.083 . LdBPK_320400.1 68 NTSAVQK|KR 0.070 . LdBPK_320400.1 69 TSAVQKK|RV 0.192 . LdBPK_320400.1 70 SAVQKKR|VA 0.281 . LdBPK_320400.1 78 AGLLLGR|YV 0.118 . LdBPK_320400.1 81 LLGRYVR|DS 0.347 . LdBPK_320400.1 124 EMFAMHK|RV 0.068 . LdBPK_320400.1 125 MFAMHKR|VL 0.205 . LdBPK_320400.1 129 HKRVLPK|VK 0.068 . LdBPK_320400.1 131 RVLPKVK|VV 0.091 . LdBPK_320400.1 156 HLLVADR|FC 0.071 . LdBPK_320400.1 173 NTDPNNK|GV 0.064 . LdBPK_320400.1 178 NKGVPVR|AY 0.138 . LdBPK_320400.1 186 YTTVQGR|EG 0.080 . LdBPK_320400.1 190 QGREGTR|SL 0.097 . LdBPK_320400.1 195 TRSLEFR|NI 0.194 . LdBPK_320400.1 216 GIEHLLR|DL 0.137 . LdBPK_320400.1 233 STQVQER|EL 0.107 . LdBPK_320400.1 242 SLIHLCK|VL 0.078 . LdBPK_320400.1 252 QIEEYLK|DV 0.089 . LdBPK_320400.1 282 QPEIYAR|RS 0.094 . LdBPK_320400.1 283 PEIYARR|SS 0.194 . LdBPK_320400.1 290 SSIEMIR|HT 0.099 . LdBPK_320400.1 306 FLAAIAR|CI 0.145 . LdBPK_320400.1 318 HGVIMNR|RK 0.084 . LdBPK_320400.1 319 GVIMNRR|KL 0.121 . LdBPK_320400.1 320 VIMNRRK|LA 0.093 . LdBPK_320400.1 323 NRRKLAR|EL 0.131 . LdBPK_320400.1 329 RELQEIK|DR 0.058 . LdBPK_320400.1 331 LQEIKDR|RA 0.120 . LdBPK_320400.1 332 QEIKDRR|AR 0.130 . LdBPK_320400.1 334 IKDRRAR|AA 0.481 . LdBPK_320400.1 339 ARAAETR|LE 0.098 . LdBPK_320400.1 344 TRLENEK|MK 0.063 . LdBPK_320400.1 346 LENEKMK|IE 0.076 . LdBPK_320400.1 352 KIEEAAK|EK 0.064 . LdBPK_320400.1 354 EEAAKEK|DN 0.085 . ____________________________^_________________

  • Fasta :-

    >LdBPK_320400.1 ATGAGCAACGATCCGAAGTCCATGAAGCCCGACCCACTTGTGGCCAGCAACGACGTCGCG TCTGACGACGGCAGTGATGGAAAGGGGGATGTCGCGGCGCCCCCGGCGTTCCTTCCCACA GCGGGCCGTGTGGAAGTGCACCCGCTGGTGCTGCTGTCCCTGGTGGACCACTACGCCCGC ATGAACACTTCTGCCGTTCAGAAAAAGCGTGTGGCAGGGCTGCTGCTTGGGCGCTACGTG CGCGACTCCACAGGGATGCAGACGCTCGACATCAACAACAGCTTCGCCGTCCCCTTCGAC GAGGACCCGCAGGATGCCGACGTATGGTTCTTTGACACGAACTACGCCCAGGAGATGTTT GCGATGCACAAACGCGTGTTACCGAAGGTGAAAGTTGTGGGGTGGTACTCCTCCGGCCCC ACCATTCAGCCCAATGACATGCTGCTGCATCTTCTGGTCGCGGATCGCTTCTGTCTCAAT CCTGTCTACTGTGTAGTAAACACCGACCCAAACAACAAGGGCGTGCCGGTGCGGGCCTAC ACGACGGTGCAGGGGCGTGAAGGCACGCGCTCACTCGAGTTCCGCAACATCCCGACCCAC CTCGGTGCGGAGGAAGCCGAGGAGATCGGCATCGAGCATCTCCTGCGCGATCTGACCGAC TCCACCATCACCACGCTCTCCACGCAGGTGCAAGAGCGGGAGCTGTCCTTGATTCATCTG TGCAAGGTGCTTCAGCAGATAGAGGAGTACCTCAAGGATGTCGGAAACGCCGTCATGCCG ATCTCCGAGGATGTACTGGAGGTGCTGCAGGAGCTGATTAGCCTGCAGCCTGAGATCTAC GCCCGCCGCTCGTCGATCGAGATGATCCGGCACACCAACGACGAGGCGATTGCGACCTTC TTAGCGGCCATCGCGCGCTGCATCGGTGCGCTGCACGGCGTCATCATGAACCGCCGCAAG CTAGCGCGAGAGCTGCAGGAAATCAAAGATCGTCGCGCCCGCGCTGCCGAGACACGGTTG GAGAACGAAAAGATGAAGATCGAGGAGGCAGCCAAGGAGAAGGACAACAACCAGGCATAG
  • Download Fasta

  • Fasta :-

    MSNDPKSMKPDPLVASNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_320400.1284 SYARRSSIEM0.996unspLdBPK_320400.1284 SYARRSSIEM0.996unspLdBPK_320400.1284 SYARRSSIEM0.996unspLdBPK_320400.1285 SARRSSIEMI0.997unspLdBPK_320400.17 SNDPKSMKPD0.997unspLdBPK_320400.183 SYVRDSTGMQ0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India