LdBPK_331900.1 | Der1-like family, putative

  • Computed_GO_Component_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_331900.1OTHER0.9989540.0008830.000163
No Results

  • Fasta :-

    >LdBPK_331900.1 MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLESQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRVFERAFAAPVRQAT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_331900.1.fa Sequence name : LdBPK_331900 Sequence length : 215 VALUES OF COMPUTED PARAMETERS Coef20 : 3.972 CoefTot : -0.268 ChDiff : 1 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.294 0.434 0.796 MesoH : 0.918 1.435 0.080 0.509 MuHd_075 : 26.785 21.821 9.107 5.725 MuHd_095 : 36.693 19.896 9.426 6.486 MuHd_100 : 32.497 15.427 7.901 5.387 MuHd_105 : 27.686 15.991 6.761 5.216 Hmax_075 : 16.333 22.867 4.149 7.257 Hmax_095 : 17.500 19.300 3.258 5.910 Hmax_100 : 16.100 14.800 2.552 4.760 Hmax_105 : 8.500 12.000 0.330 3.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5928 0.4072 DFMC : 0.6617 0.3383
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 215 LdBPK_331900.1 MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFLYFGPISAHCIMEIQWIYLVS 80 SYLESQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYLSYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLI 160 MNTMVSGMTNEVLGNVLGHILWYFLEVFPRITGQSPLRIQRVFERAFAAPVRQAT 240 ................................................................................ 80 ................................................................................ 160 ....................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_331900.1 10 VIENALR|ET 0.075 . LdBPK_331900.1 48 SPSLVFK|EH 0.072 . LdBPK_331900.1 54 KEHQYWR|LV 0.121 . LdBPK_331900.1 90 ESQYYHR|RP 0.076 . LdBPK_331900.1 91 SQYYHRR|PL 0.169 . LdBPK_331900.1 110 CSLLGLR|FS 0.076 . LdBPK_331900.1 134 LTYIMSR|LF 0.092 . LdBPK_331900.1 152 VVPVPMR|LL 0.076 . LdBPK_331900.1 190 FLEVFPR|IT 0.133 . LdBPK_331900.1 198 TGQSPLR|IQ 0.092 . LdBPK_331900.1 201 SPLRIQR|VF 0.262 . LdBPK_331900.1 205 IQRVFER|AF 0.105 . LdBPK_331900.1 212 AFAAPVR|QA 0.111 . ____________________________^_________________

  • Fasta :-

    >LdBPK_331900.1 ATGAACAACGTTATTGAAAATGCCCTGCGGGAGACACCCATCACACTCGTGGTCTGCGGG CTGATGGGGATGCTAGGCGTTATGTCATCATTGGAGGTGATTCATCCTCTCTACTTGCTG CTTAGCCCGTCGTTGGTGTTCAAAGAGCATCAGTACTGGCGCTTGGTCACAAACTTCCTC TACTTTGGTCCAATCAGCGCTCACTGCATCATGGAAATTCAGTGGATCTACCTGGTGAGC TCTTACCTTGAATCGCAGTATTACCACAGGCGACCGCTTGACTACATCTTCCTACTCTTG ATCATCGGCTGCTCGCTTTTGGGCCTGCGGTTTTCGTCGATTGTGAATGTGCCATACCTA AGCTACATGCTAGGCACGTGCCTGACATACATTATGAGTCGTCTGTTCAACGACATGGAA GTTGCCATCTTTTTCGTGGTTCCGGTTCCAATGCGCCTTCTCCCGTTTGTGCTTCTGATC ATGAACACAATGGTATCTGGAATGACGAACGAGGTCCTGGGCAATGTTCTCGGGCACATC TTATGGTATTTTTTAGAGGTGTTTCCCCGCATCACCGGGCAGAGCCCTCTTCGAATCCAG CGTGTGTTCGAGCGGGCATTTGCTGCACCGGTACGTCAGGCGACATAG
  • Download Fasta

  • Fasta :-

    MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLESQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRVFERAFAAPVRQAT

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India