LdBPK_332750.1 | Mitochondrial-processing peptidase subunit alpha

_IDPredictionOTHERSPmTPCS_Position
LdBPK_332750.1mTP0.3709280.0006720.628400CS pos: 7-8. SRL-AR. Pr: 0.1379
No Results

  • Fasta :-

    >LdBPK_332750.1 MLAASRLARGVAETVTRESFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEAGSFG AAAVMESLPLRSNARMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLDVLN GMWLHPTENDEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVADHKAFVQEAEVRLQFPQSTAPSLLSSSAETA NKAAAATAQLHPYTGGCEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTFSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEH VSNLLKIMIFQAASISQRITPVHLEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMARLHEVSAQLVEHPVTFAVYGETKGMPEYHQLVQALKKSYASLNKS TPA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_332750.1.fa Sequence name : LdBPK_332750 Sequence length : 483 VALUES OF COMPUTED PARAMETERS Coef20 : 4.859 CoefTot : 0.940 ChDiff : -4 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.006 0.134 0.508 MesoH : -0.107 0.277 -0.323 0.251 MuHd_075 : 22.694 15.119 5.886 3.590 MuHd_095 : 45.080 25.895 10.925 9.993 MuHd_100 : 41.165 23.251 9.227 9.227 MuHd_105 : 32.440 19.281 6.866 7.517 Hmax_075 : 0.300 10.200 -0.331 1.990 Hmax_095 : 14.600 19.400 3.133 5.780 Hmax_100 : 14.000 14.900 2.260 4.520 Hmax_105 : 6.650 11.813 0.184 3.841 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0560 0.9440 DFMC : 0.0609 0.9391 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.1667 CMi = 0.27473 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 483 LdBPK_332750.1 MLAASRLARGVAETVTRESFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEAGSFGAAAVMESLPLRSNARMTTET 80 ISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLDVLNGMWLHPTENDEEFAVAKAQTLHRSSLMSRDATSMLFELVH 160 KAGWSGRGLGNPLSPTEQQLEQLTLERFHAFHRRYTTPERTVLAATGVADHKAFVQEAEVRLQFPQSTAPSLLSSSAETA 240 NKAAAATAQLHPYTGGCEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTFSVIQTLLGGGTSFSSGGPGKGMQ 320 TKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEHVSNLLKIMIFQAASISQRITPVHLEMAKNQLSSQLILLGE 400 GREQLLNDMGFNLLVHNYTITPQETIQGSAQVTMARLHEVSAQLVEHPVTFAVYGETKGMPEYHQLVQALKKSYASLNKS 480 TPA 560 ........P....................................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_332750.1 6 -MLAASR|LA 0.084 . LdBPK_332750.1 9 AASRLAR|GV 0.555 *ProP* LdBPK_332750.1 17 VAETVTR|ES 0.086 . LdBPK_332750.1 24 ESFTISR|LT 0.077 . LdBPK_332750.1 30 RLTNGLR|VI 0.075 . LdBPK_332750.1 52 FSLNGPK|FE 0.067 . LdBPK_332750.1 71 MESLPLR|SN 0.141 . LdBPK_332750.1 75 PLRSNAR|MT 0.115 . LdBPK_332750.1 93 VFGNAYK|VT 0.062 . LdBPK_332750.1 98 YKVTNNR|EA 0.106 . LdBPK_332750.1 109 VMLMMPR|YH 0.088 . LdBPK_332750.1 113 MPRYHQK|EG 0.091 . LdBPK_332750.1 137 EEFAVAK|AQ 0.067 . LdBPK_332750.1 143 KAQTLHR|SS 0.133 . LdBPK_332750.1 149 RSSLMSR|DA 0.186 . LdBPK_332750.1 161 LFELVHK|AG 0.062 . LdBPK_332750.1 167 KAGWSGR|GL 0.143 . LdBPK_332750.1 187 EQLTLER|FH 0.071 . LdBPK_332750.1 193 RFHAFHR|RY 0.100 . LdBPK_332750.1 194 FHAFHRR|YT 0.272 . LdBPK_332750.1 200 RYTTPER|TV 0.097 . LdBPK_332750.1 212 TGVADHK|AF 0.062 . LdBPK_332750.1 221 VQEAEVR|LQ 0.080 . LdBPK_332750.1 242 SAETANK|AA 0.065 . LdBPK_332750.1 271 APESMNK|FQ 0.081 . LdBPK_332750.1 275 MNKFQEK|NL 0.085 . LdBPK_332750.1 317 SSGGPGK|GM 0.081 . LdBPK_332750.1 322 GKGMQTK|LF 0.080 . LdBPK_332750.1 325 MQTKLFR|EV 0.118 . LdBPK_332750.1 330 FREVLNR|EP 0.082 . LdBPK_332750.1 366 HVSNLLK|IM 0.064 . LdBPK_332750.1 378 AASISQR|IT 0.119 . LdBPK_332750.1 388 VHLEMAK|NQ 0.056 . LdBPK_332750.1 402 ILLGEGR|EQ 0.068 . LdBPK_332750.1 436 AQVTMAR|LH 0.083 . LdBPK_332750.1 458 AVYGETK|GM 0.059 . LdBPK_332750.1 471 QLVQALK|KS 0.067 . LdBPK_332750.1 472 LVQALKK|SY 0.129 . LdBPK_332750.1 479 SYASLNK|ST 0.084 . ____________________________^_________________

  • Fasta :-

    >LdBPK_332750.1 ATGCTCGCTGCGAGTCGCCTTGCCCGCGGCGTTGCCGAGACGGTCACGCGCGAGAGCTTC ACCATATCCCGTCTTACGAACGGCCTGCGCGTCATCACATGCGAAGACGGCAACGGCATC ACCGGCATGGGGCTTTTCTCCTTGAACGGCCCCAAGTTCGAGGAGGCGGGGAGCTTTGGC GCTGCGGCGGTGATGGAGTCACTTCCGCTGCGCAGCAACGCGCGCATGACGACCGAGACG ATTAGCCAGTCGCTCGGTGTCTTCGGCAACGCGTACAAGGTGACCAACAACCGCGAGGCC ATGTCCGTCATGCTCATGATGCCGCGCTACCACCAGAAGGAAGGGCTCGATGTACTGAAC GGGATGTGGCTGCACCCAACCGAGAACGACGAGGAGTTCGCCGTGGCGAAGGCGCAGACC CTGCACCGCAGCTCTCTCATGAGTCGAGACGCGACGAGCATGCTGTTCGAGCTTGTCCAC AAGGCCGGCTGGAGCGGTCGTGGGCTCGGCAACCCGCTCTCCCCGACGGAGCAGCAGCTG GAACAGCTGACACTGGAGAGGTTCCACGCCTTCCACCGCCGCTACACCACGCCGGAGCGG ACGGTGCTGGCGGCGACGGGTGTGGCGGATCACAAGGCGTTTGTACAGGAAGCGGAGGTG CGGCTGCAGTTCCCTCAATCGACGGCGCCATCCCTCCTTTCGTCTAGCGCAGAGACGGCG AACAAGGCAGCTGCTGCGACAGCTCAGCTTCACCCGTACACGGGCGGCTGCGAGTACGTG CAGAACACGACGGCGCCGGAGTCCATGAACAAGTTTCAGGAAAAGAACCTTAGCCACATG GCCCTCTTCTTCCAGGCCATCCCAATGGCCCACCCCGACTATTTCACCTTCTCGGTCATT CAAACACTGCTGGGCGGCGGCACCTCGTTCAGCTCTGGCGGCCCTGGCAAGGGCATGCAA ACCAAGCTGTTTCGTGAGGTGCTGAACCGGGAGCCGAACCTGCACGGCATGGAGTGCATT ACGGCGTGGTACAGCGATGGTGGCTTGATCGGCCTCTACGGCTCTGCGCCACACGAGCAC GTGAGCAACCTCTTAAAGATCATGATTTTCCAGGCGGCGTCGATTAGCCAGCGCATCACC CCGGTGCACCTGGAGATGGCCAAAAACCAGCTAAGCTCGCAGCTCATCCTGTTGGGGGAG GGGCGTGAACAGTTGCTGAACGACATGGGCTTCAACCTTCTCGTGCACAACTACACGATT ACGCCGCAGGAGACTATTCAGGGCAGCGCTCAGGTGACAATGGCACGTCTCCACGAGGTG AGTGCGCAGCTGGTTGAGCACCCGGTGACGTTTGCCGTGTACGGGGAGACGAAGGGGATG CCGGAGTACCATCAGCTAGTCCAGGCTCTGAAGAAGTCGTATGCGTCCCTGAACAAGAGC ACACCGGCGTGA
  • Download Fasta

  • Fasta :-

    MLAASRLARGVAETVTRESFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEAGSFG AAAVMESLPLRSNARMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLDVLN GMWLHPTENDEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVADHKAFVQEAEVRLQFPQSTAPSLLSSSAETA NKAAAATAQLHPYTGGCEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTFSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEH VSNLLKIMIFQAASISQRITPVHLEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMARLHEVSAQLVEHPVTFAVYGETKGMPEYHQLVQALKKSYASLNKS TPA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_332750.1197 TRRYTTPERT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India