LdBPK_332970.1 | cysteine peptidase, Clan CA, family C51, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_332970.1OTHER0.9993640.0001200.000516
No Results

  • Fasta :-

    >LdBPK_332970.1 MAAAPLSRTFSPKSSESSFSSHSQERMEQNYRESAAGFGPPPAESASNAANGDVVVCQSR SHRETTAQPNTSGNNYGESTRVGARDNKSADSGIASAGVARCFVLTHDPLLYGVLKWGLA TLLLLFLAFVVFGMLYSSIRYGGNCTGTNGTSGGTVKPREPCVTPFSTILGVFNGVFGYS NCNDSYVSTELGYINLTVPELNNETGQVTYISKQFYTGLAWQCVEYARRYWMQSGTPQPA YFESVPGAADIWNLTFVRLLSNTSMKLPLHRFRNGDPVTSNLQVPAVGDIIIYPVQDGGF PYGHVAVIASVEISTHGAIYVAEQNWANAVWPSAYHNYSRRIPLYYDMLTSTITLDDPKG KIIGWVRYG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_332970.1.fa Sequence name : LdBPK_332970 Sequence length : 369 VALUES OF COMPUTED PARAMETERS Coef20 : 4.491 CoefTot : 0.509 ChDiff : -1 ZoneTo : 15 KR : 2 DE : 0 CleavSite : 18 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.629 2.812 0.461 0.930 MesoH : 0.634 0.813 -0.020 0.400 MuHd_075 : 23.276 11.413 5.152 5.347 MuHd_095 : 24.722 13.437 6.630 4.274 MuHd_100 : 18.792 10.842 5.207 3.305 MuHd_105 : 12.470 8.110 3.229 2.525 Hmax_075 : 12.717 6.183 0.580 3.150 Hmax_095 : 10.588 6.125 0.969 2.468 Hmax_100 : 10.500 5.200 0.841 2.200 Hmax_105 : 10.150 4.667 0.705 2.217 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8934 0.1066 DFMC : 0.8514 0.1486
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 369 LdBPK_332970.1 MAAAPLSRTFSPKSSESSFSSHSQERMEQNYRESAAGFGPPPAESASNAANGDVVVCQSRSHRETTAQPNTSGNNYGEST 80 RVGARDNKSADSGIASAGVARCFVLTHDPLLYGVLKWGLATLLLLFLAFVVFGMLYSSIRYGGNCTGTNGTSGGTVKPRE 160 PCVTPFSTILGVFNGVFGYSNCNDSYVSTELGYINLTVPELNNETGQVTYISKQFYTGLAWQCVEYARRYWMQSGTPQPA 240 YFESVPGAADIWNLTFVRLLSNTSMKLPLHRFRNGDPVTSNLQVPAVGDIIIYPVQDGGFPYGHVAVIASVEISTHGAIY 320 VAEQNWANAVWPSAYHNYSRRIPLYYDMLTSTITLDDPKGKIIGWVRYG 400 ..............................................................P................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_332970.1 8 AAAPLSR|TF 0.092 . LdBPK_332970.1 13 SRTFSPK|SS 0.149 . LdBPK_332970.1 26 SSHSQER|ME 0.110 . LdBPK_332970.1 32 RMEQNYR|ES 0.088 . LdBPK_332970.1 60 VVVCQSR|SH 0.106 . LdBPK_332970.1 63 CQSRSHR|ET 0.527 *ProP* LdBPK_332970.1 81 NYGESTR|VG 0.068 . LdBPK_332970.1 85 STRVGAR|DN 0.114 . LdBPK_332970.1 88 VGARDNK|SA 0.352 . LdBPK_332970.1 101 ASAGVAR|CF 0.089 . LdBPK_332970.1 116 LLYGVLK|WG 0.061 . LdBPK_332970.1 140 MLYSSIR|YG 0.112 . LdBPK_332970.1 157 TSGGTVK|PR 0.073 . LdBPK_332970.1 159 GGTVKPR|EP 0.098 . LdBPK_332970.1 213 QVTYISK|QF 0.069 . LdBPK_332970.1 228 QCVEYAR|RY 0.084 . LdBPK_332970.1 229 CVEYARR|YW 0.183 . LdBPK_332970.1 258 WNLTFVR|LL 0.074 . LdBPK_332970.1 266 LSNTSMK|LP 0.065 . LdBPK_332970.1 271 MKLPLHR|FR 0.094 . LdBPK_332970.1 273 LPLHRFR|NG 0.106 . LdBPK_332970.1 340 AYHNYSR|RI 0.087 . LdBPK_332970.1 341 YHNYSRR|IP 0.114 . LdBPK_332970.1 359 ITLDDPK|GK 0.060 . LdBPK_332970.1 361 LDDPKGK|II 0.094 . LdBPK_332970.1 367 KIIGWVR|YG 0.087 . ____________________________^_________________

  • Fasta :-

    >LdBPK_332970.1 ATGGCTGCCGCTCCTCTTTCCAGGACGTTCTCACCCAAGTCCTCAGAAAGCTCCTTCTCA TCTCACAGCCAAGAGAGAATGGAGCAAAACTACCGAGAAAGCGCTGCGGGGTTTGGGCCT CCACCAGCCGAGAGCGCCTCCAATGCTGCAAATGGCGATGTCGTCGTCTGCCAGTCTCGC AGCCATCGTGAAACCACCGCTCAACCCAATACCTCTGGCAACAACTACGGTGAAAGCACC CGGGTCGGCGCACGCGATAACAAGAGCGCCGACTCGGGCATCGCTAGCGCCGGCGTTGCG CGCTGCTTTGTACTGACACACGATCCGCTACTTTACGGCGTTCTCAAGTGGGGTCTGGCG ACTTTATTGCTTCTTTTCCTCGCCTTCGTTGTCTTTGGCATGTTATACAGTTCCATCCGC TACGGCGGGAACTGTACCGGCACCAATGGGACCTCAGGTGGGACAGTGAAGCCACGCGAA CCGTGCGTCACGCCGTTCAGCACCATCCTCGGCGTCTTCAACGGCGTCTTTGGCTACAGC AACTGCAATGACAGCTACGTGTCTACAGAGCTGGGGTACATTAACCTGACGGTGCCGGAG CTGAACAACGAAACAGGGCAGGTAACCTACATCTCTAAGCAGTTCTACACGGGGCTGGCG TGGCAGTGCGTTGAGTACGCGCGGCGATACTGGATGCAGAGCGGAACACCGCAGCCAGCG TACTTCGAATCCGTTCCAGGGGCCGCAGACATTTGGAACCTGACCTTTGTGAGGCTCCTG TCGAACACATCGATGAAGCTGCCGCTGCACAGGTTCAGGAACGGCGACCCCGTGACGAGC AACCTCCAGGTACCTGCAGTCGGTGACATCATCATCTACCCCGTCCAAGATGGTGGCTTT CCTTACGGCCACGTCGCCGTCATCGCGAGTGTTGAAATATCGACGCACGGCGCCATCTAC GTGGCGGAACAAAACTGGGCTAACGCCGTGTGGCCATCGGCGTACCACAACTACAGCAGA AGGATTCCATTGTACTATGACATGCTGACCTCCACCATCACGCTTGATGATCCGAAAGGT AAAATTATCGGGTGGGTGCGGTACGGCTGA
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  • Fasta :-

    MAAAPLSRTFSPKSSESSFSSHSQERMEQNYRESAAGFGPPPAESASNAANGDVVVCQSR SHRETTAQPNTSGNNYGESTRVGARDNKSADSGIASAGVARCFVLTHDPLLYGVLKWGLA TLLLLFLAFVVFGMLYSSIRYGGNCTGTNGTSGGTVKPREPCVTPFSTILGVFNGVFGYS NCNDSYVSTELGYINLTVPELNNETGQVTYISKQFYTGLAWQCVEYARRYWMQSGTPQPA YFESVPGAADIWNLTFVRLLSNTSMKLPLHRFRNGDPVTSNLQVPAVGDIIIYPVQDGGF PYGHVAVIASVEISTHGAIYVAEQNWANAVWPSAYHNYSRRIPLYYDMLTSTITLDDPKG KIIGWVRYG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_332970.123 SFSSHSQERM0.996unspLdBPK_332970.123 SFSSHSQERM0.996unspLdBPK_332970.123 SFSSHSQERM0.996unspLdBPK_332970.161 SCQSRSHRET0.992unspLdBPK_332970.111 SSRTFSPKSS0.997unspLdBPK_332970.114 SFSPKSSESS0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India