LdBPK_340670.1 | proteasome regulatory non-ATPase subunit 11, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_340670.1OTHER0.9991890.0005350.000276
No Results

  • Fasta :-

    >LdBPK_340670.1 MDPSAFGMMAGRGMGRQTEVRDARDTAETIQISSIALLKMLIHGRAGVPLEVMGLMIGEE IDDYTIRVADVFSMPQTATGQSVEAVDPEYQVHMLDKLKLVGRHENVVGWYHSHPGFGCW LSSEDVMTAAGYENLTPRSVSVVVDPIQSVRGKVVIDAFRTIPQEIMAMRAMGEYVEPRQ VTSNIGFLSKPSAVALSHNLNRQYYNLPVTFRKKNHELRLLLNVYRKGWQEGFKLEKAKV YQRETRTSIRELISLSKQAEKYITQGRDEDDLGNVGQINAMSHLQMEAENVIHRNLNQSI GAMINAVVF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_340670.1.fa Sequence name : LdBPK_340670 Sequence length : 309 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.982 ChDiff : -2 ZoneTo : 18 KR : 2 DE : 1 CleavSite : 14 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.235 -0.071 0.478 MesoH : -0.676 0.347 -0.392 0.221 MuHd_075 : 39.911 20.039 8.886 6.844 MuHd_095 : 20.410 4.966 4.798 5.053 MuHd_100 : 27.342 4.736 5.931 4.765 MuHd_105 : 29.540 6.607 5.672 4.523 Hmax_075 : 17.150 11.433 1.653 4.900 Hmax_095 : 11.112 2.625 0.679 3.474 Hmax_100 : 11.600 1.100 0.550 2.690 Hmax_105 : 14.000 3.400 0.600 2.739 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9045 0.0955 DFMC : 0.7866 0.2134
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 309 LdBPK_340670.1 MDPSAFGMMAGRGMGRQTEVRDARDTAETIQISSIALLKMLIHGRAGVPLEVMGLMIGEEIDDYTIRVADVFSMPQTATG 80 QSVEAVDPEYQVHMLDKLKLVGRHENVVGWYHSHPGFGCWLSSEDVMTAAGYENLTPRSVSVVVDPIQSVRGKVVIDAFR 160 TIPQEIMAMRAMGEYVEPRQVTSNIGFLSKPSAVALSHNLNRQYYNLPVTFRKKNHELRLLLNVYRKGWQEGFKLEKAKV 240 YQRETRTSIRELISLSKQAEKYITQGRDEDDLGNVGQINAMSHLQMEAENVIHRNLNQSIGAMINAVVF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_340670.1 12 FGMMAGR|GM 0.115 . LdBPK_340670.1 16 AGRGMGR|QT 0.089 . LdBPK_340670.1 21 GRQTEVR|DA 0.188 . LdBPK_340670.1 24 TEVRDAR|DT 0.386 . LdBPK_340670.1 39 SSIALLK|ML 0.075 . LdBPK_340670.1 45 KMLIHGR|AG 0.090 . LdBPK_340670.1 67 IDDYTIR|VA 0.083 . LdBPK_340670.1 97 QVHMLDK|LK 0.068 . LdBPK_340670.1 99 HMLDKLK|LV 0.090 . LdBPK_340670.1 103 KLKLVGR|HE 0.097 . LdBPK_340670.1 138 YENLTPR|SV 0.286 . LdBPK_340670.1 151 DPIQSVR|GK 0.084 . LdBPK_340670.1 153 IQSVRGK|VV 0.129 . LdBPK_340670.1 160 VVIDAFR|TI 0.091 . LdBPK_340670.1 170 QEIMAMR|AM 0.109 . LdBPK_340670.1 179 GEYVEPR|QV 0.143 . LdBPK_340670.1 190 NIGFLSK|PS 0.066 . LdBPK_340670.1 202 LSHNLNR|QY 0.109 . LdBPK_340670.1 212 NLPVTFR|KK 0.088 . LdBPK_340670.1 213 LPVTFRK|KN 0.092 . LdBPK_340670.1 214 PVTFRKK|NH 0.078 . LdBPK_340670.1 219 KKNHELR|LL 0.093 . LdBPK_340670.1 226 LLLNVYR|KG 0.087 . LdBPK_340670.1 227 LLNVYRK|GW 0.124 . LdBPK_340670.1 234 GWQEGFK|LE 0.060 . LdBPK_340670.1 237 EGFKLEK|AK 0.060 . LdBPK_340670.1 239 FKLEKAK|VY 0.075 . LdBPK_340670.1 243 KAKVYQR|ET 0.100 . LdBPK_340670.1 246 VYQRETR|TS 0.230 . LdBPK_340670.1 250 ETRTSIR|EL 0.083 . LdBPK_340670.1 257 ELISLSK|QA 0.078 . LdBPK_340670.1 261 LSKQAEK|YI 0.085 . LdBPK_340670.1 267 KYITQGR|DE 0.119 . LdBPK_340670.1 294 AENVIHR|NL 0.115 . ____________________________^_________________

  • Fasta :-

    >LdBPK_340670.1 ATGGACCCCTCGGCCTTCGGAATGATGGCTGGCCGCGGCATGGGCCGCCAGACTGAGGTG CGCGATGCCCGCGACACTGCGGAGACGATTCAGATTTCGTCCATCGCACTGCTGAAGATG CTCATTCACGGTCGCGCCGGCGTGCCGCTGGAGGTGATGGGCCTCATGATTGGCGAGGAG ATCGACGACTACACAATTCGTGTGGCGGATGTCTTCTCGATGCCGCAGACCGCCACGGGT CAGTCCGTCGAGGCGGTCGACCCGGAGTACCAGGTGCACATGCTGGACAAGCTGAAACTG GTCGGTCGTCACGAGAACGTCGTGGGGTGGTACCACAGCCATCCCGGATTCGGCTGCTGG CTGTCCTCGGAGGATGTGATGACAGCCGCCGGCTACGAGAATCTGACCCCGCGCAGCGTG TCGGTCGTGGTGGACCCCATCCAGTCTGTGCGCGGCAAGGTGGTGATTGACGCCTTCCGC ACTATCCCCCAGGAAATTATGGCTATGCGGGCGATGGGTGAGTACGTGGAACCGCGTCAG GTGACGTCGAACATCGGATTTCTGTCCAAGCCGTCGGCTGTGGCCCTCTCCCACAATCTC AACCGCCAGTACTACAACCTACCCGTCACCTTCCGTAAGAAGAATCACGAGTTGCGGCTG CTGCTGAACGTGTACCGCAAGGGCTGGCAGGAGGGCTTCAAGTTGGAGAAGGCGAAGGTG TACCAGCGGGAGACCCGCACGAGCATTCGCGAGCTCATCTCCCTCTCAAAGCAGGCGGAG AAGTACATAACGCAAGGACGCGACGAGGACGATCTCGGCAACGTCGGTCAGATCAACGCC ATGTCTCACCTGCAGATGGAGGCGGAAAACGTCATCCACCGCAATCTTAACCAATCCATC GGCGCCATGATCAACGCAGTGGTGTTCTGA
  • Download Fasta

  • Fasta :-

    MDPSAFGMMAGRGMGRQTEVRDARDTAETIQISSIALLKMLIHGRAGVPLEVMGLMIGEE IDDYTIRVADVFSMPQTATGQSVEAVDPEYQVHMLDKLKLVGRHENVVGWYHSHPGFGCW LSSEDVMTAAGYENLTPRSVSVVVDPIQSVRGKVVIDAFRTIPQEIMAMRAMGEYVEPRQ VTSNIGFLSKPSAVALSHNLNRQYYNLPVTFRKKNHELRLLLNVYRKGWQEGFKLEKAKV YQRETRTSIRELISLSKQAEKYITQGRDEDDLGNVGQINAMSHLQMEAENVIHRNLNQSI GAMINAVVF

  • title: MPN+ (JAMM) motif
  • coordinates: E51,H112,H114,S122,D125
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_340670.1248 SETRTSIREL0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India