LdBPK_351390.1 | mitochondrial processing peptidase, beta subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_351390.1mTP0.4637220.0021390.534139CS pos: 26-27. FRE-VL. Pr: 0.2805
No Results

  • Fasta :-

    >LdBPK_351390.1 MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGV WMDAGSRYEPIAYAGTARVLEKCGFLGTTNQSREQIAKAVEELGGQLEVSVGREQTYLYM KVTKENTDRAIGLLADVVRNARMEDADIVKARAMVHQDQHLFEERPDDLVMDNLHRCAFD STPYGVGTPLYGTEEGVKKVTAEQMRNYRASTLAGNRVVVVGSGGVDHTVLEKAAKSYFG DLPRAPEKAATVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPG SFHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVV GRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQAKVNMKAQLLFNMDGSANSA KDIGRQVLHYGRRVPLTEMYDRIDDTTASNVQEVLQHYFYGRKPVYSYLGYISSIPNYDW TQHWSYKYWY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_351390.1.fa Sequence name : LdBPK_351390 Sequence length : 490 VALUES OF COMPUTED PARAMETERS Coef20 : 4.678 CoefTot : 0.135 ChDiff : -3 ZoneTo : 47 KR : 5 DE : 1 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 1.065 0.031 0.446 MesoH : -0.704 0.134 -0.392 0.169 MuHd_075 : 35.126 21.358 9.576 7.990 MuHd_095 : 33.657 26.253 10.148 7.932 MuHd_100 : 31.390 24.226 9.575 7.397 MuHd_105 : 25.385 25.414 7.641 7.641 Hmax_075 : 11.900 17.383 2.912 5.787 Hmax_095 : 12.900 17.150 1.762 5.547 Hmax_100 : 12.400 14.400 2.293 4.820 Hmax_105 : -1.600 5.337 -1.305 1.645 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1705 0.8295 DFMC : 0.1888 0.8112 This protein is probably imported in mitochondria. f(Ser) = 0.1489 f(Arg) = 0.0851 CMi = 0.78740 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 490 LdBPK_351390.1 MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGVWMDAGSRYEPIAYAGTARVL 80 EKCGFLGTTNQSREQIAKAVEELGGQLEVSVGREQTYLYMKVTKENTDRAIGLLADVVRNARMEDADIVKARAMVHQDQH 160 LFEERPDDLVMDNLHRCAFDSTPYGVGTPLYGTEEGVKKVTAEQMRNYRASTLAGNRVVVVGSGGVDHTVLEKAAKSYFG 240 DLPRAPEKAATVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPGSFHRSQHELGQHAMHRVLKT 320 FSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVVGRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQ 400 AKVNMKAQLLFNMDGSANSAKDIGRQVLHYGRRVPLTEMYDRIDDTTASNVQEVLQHYFYGRKPVYSYLGYISSIPNYDW 480 TQHWSYKYWY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_351390.1 11 FSTLVQR|AR 0.084 . LdBPK_351390.1 13 TLVQRAR|PA 0.136 . LdBPK_351390.1 25 ATSAAFR|EV 0.129 . LdBPK_351390.1 30 FREVLSK|IP 0.065 . LdBPK_351390.1 44 TLGNGVR|VA 0.104 . LdBPK_351390.1 54 EENPLSK|LA 0.074 . LdBPK_351390.1 67 WMDAGSR|YE 0.068 . LdBPK_351390.1 78 AYAGTAR|VL 0.118 . LdBPK_351390.1 82 TARVLEK|CG 0.071 . LdBPK_351390.1 93 GTTNQSR|EQ 0.081 . LdBPK_351390.1 98 SREQIAK|AV 0.141 . LdBPK_351390.1 113 LEVSVGR|EQ 0.076 . LdBPK_351390.1 121 QTYLYMK|VT 0.060 . LdBPK_351390.1 124 LYMKVTK|EN 0.067 . LdBPK_351390.1 129 TKENTDR|AI 0.114 . LdBPK_351390.1 139 LLADVVR|NA 0.112 . LdBPK_351390.1 142 DVVRNAR|ME 0.188 . LdBPK_351390.1 150 EDADIVK|AR 0.059 . LdBPK_351390.1 152 ADIVKAR|AM 0.148 . LdBPK_351390.1 165 QHLFEER|PD 0.083 . LdBPK_351390.1 176 VMDNLHR|CA 0.099 . LdBPK_351390.1 198 GTEEGVK|KV 0.069 . LdBPK_351390.1 199 TEEGVKK|VT 0.106 . LdBPK_351390.1 206 VTAEQMR|NY 0.104 . LdBPK_351390.1 209 EQMRNYR|AS 0.245 . LdBPK_351390.1 217 STLAGNR|VV 0.081 . LdBPK_351390.1 233 DHTVLEK|AA 0.062 . LdBPK_351390.1 236 VLEKAAK|SY 0.090 . LdBPK_351390.1 244 YFGDLPR|AP 0.092 . LdBPK_351390.1 248 LPRAPEK|AA 0.084 . LdBPK_351390.1 257 TVIPESR|YV 0.176 . LdBPK_351390.1 264 YVGGEYR|LW 0.074 . LdBPK_351390.1 269 YRLWNLR|YK 0.085 . LdBPK_351390.1 271 LWNLRYK|TV 0.086 . LdBPK_351390.1 304 IPGSFHR|SQ 0.178 . LdBPK_351390.1 316 GQHAMHR|VL 0.084 . LdBPK_351390.1 319 AMHRVLK|TF 0.161 . LdBPK_351390.1 337 NTHFNEK|SI 0.114 . LdBPK_351390.1 350 PFLHSYK|DV 0.111 . LdBPK_351390.1 362 GMYVVGR|QA 0.156 . LdBPK_351390.1 387 TIAEWCR|IA 0.139 . LdBPK_351390.1 391 WCRIAQK|ML 0.075 . LdBPK_351390.1 402 NELAQAK|VN 0.067 . LdBPK_351390.1 406 QAKVNMK|AQ 0.058 . LdBPK_351390.1 421 GSANSAK|DI 0.155 . LdBPK_351390.1 425 SAKDIGR|QV 0.133 . LdBPK_351390.1 432 QVLHYGR|RV 0.078 . LdBPK_351390.1 433 VLHYGRR|VP 0.098 . LdBPK_351390.1 442 LTEMYDR|ID 0.079 . LdBPK_351390.1 462 QHYFYGR|KP 0.074 . LdBPK_351390.1 463 HYFYGRK|PV 0.092 . LdBPK_351390.1 487 TQHWSYK|YW 0.096 . ____________________________^_________________

  • Fasta :-

    >LdBPK_351390.1 ATGTCGGTTAGCTTTTCCACCCTGGTGCAGCGCGCCCGTCCGGCGTCGAACCACGCGACT TCGGCTGCGTTCCGCGAAGTCCTCAGCAAGATCCCGCCCACCAATGTGTCGACGCTCGGC AACGGCGTGCGCGTTGCGTGCGAGGAGAACCCGCTTTCTAAGCTCGCGACCGTCGGCGTG TGGATGGACGCCGGGTCCCGCTACGAGCCGATTGCCTACGCCGGCACGGCCCGCGTGCTG GAGAAGTGCGGCTTCCTTGGCACGACGAACCAGTCACGCGAGCAGATCGCGAAGGCTGTC GAGGAGCTTGGCGGCCAGCTGGAGGTGAGCGTGGGCCGTGAGCAGACCTACCTGTACATG AAGGTCACCAAGGAGAACACTGACCGTGCTATCGGTCTGCTGGCTGACGTGGTGCGCAAC GCTCGCATGGAGGATGCCGACATCGTGAAGGCACGCGCCATGGTGCACCAGGATCAGCAC CTGTTCGAGGAGCGCCCCGACGATCTGGTCATGGACAACTTGCACCGCTGCGCTTTCGAC AGCACCCCGTACGGTGTGGGTACTCCGCTCTACGGTACGGAGGAAGGCGTAAAGAAGGTG ACGGCCGAGCAGATGCGCAACTACCGCGCCAGCACCCTCGCCGGCAACCGCGTCGTCGTT GTTGGCAGCGGTGGCGTCGACCACACCGTCCTGGAGAAGGCCGCCAAGAGCTACTTTGGT GACCTCCCCAGGGCTCCTGAGAAGGCCGCCACCGTGATTCCAGAGTCCCGCTACGTCGGT GGTGAGTACCGCCTGTGGAACCTGCGCTACAAAACGGTGAACGTGGCCTGGGGCTTCGAG ACCTGCGGCGCCGCGTGTGAGGACAACGTCCCGCTCGCCCTCGCGTGCGAGATTCCGGGC TCCTTCCACCGTTCCCAGCACGAGCTCGGCCAGCACGCCATGCATCGCGTGCTGAAGACC TTCTCCTCGCTCGACCACTCCACCCCGACCAACACTCACTTCAACGAGAAGTCCATCGAG ACCGCGAACCCATTCCTACACAGCTACAAGGACGTCGGCCTGTGCGGCATGTATGTGGTG GGCCGCCAGGCGATGGGTGGCCCGGGCGACGGTGGTGTGATTGTGGAGGTGCTGCAGTAC ACGATCGCCGAGTGGTGCCGTATTGCGCAGAAGATGCTGCACGACAACGAGCTCGCGCAG GCGAAGGTGAACATGAAGGCGCAGCTGCTTTTCAACATGGACGGTAGCGCCAACTCCGCC AAGGATATTGGTCGCCAGGTGCTGCACTACGGTCGCCGCGTGCCGCTGACGGAGATGTAC GACCGCATCGACGACACCACCGCTAGCAACGTCCAGGAGGTTCTCCAGCACTACTTCTAC GGCCGCAAGCCCGTGTACAGCTATCTCGGCTACATCTCGTCCATTCCCAACTACGATTGG ACGCAGCACTGGTCGTACAAGTACTGGTATTAG
  • Download Fasta

  • Fasta :-

    MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGV WMDAGSRYEPIAYAGTARVLEKCGFLGTTNQSREQIAKAVEELGGQLEVSVGREQTYLYM KVTKENTDRAIGLLADVVRNARMEDADIVKARAMVHQDQHLFEERPDDLVMDNLHRCAFD STPYGVGTPLYGTEEGVKKVTAEQMRNYRASTLAGNRVVVVGSGGVDHTVLEKAAKSYFG DLPRAPEKAATVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPG SFHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVV GRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQAKVNMKAQLLFNMDGSANSA KDIGRQVLHYGRRVPLTEMYDRIDDTTASNVQEVLQHYFYGRKPVYSYLGYISSIPNYDW TQHWSYKYWY

    No Results
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No Results
IDSitePeptideScoreMethod
LdBPK_351390.1419 SGSANSAKDI0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India