LdBPK_353880.1 | proteasome beta 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_353880.1OTHER0.9996150.0001690.000216
No Results

  • Fasta :-

    >LdBPK_353880.1 MPGFNFENVQRNLSLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGSIAAMAQLEVAYKDNMTCEEA KELVTSAIHKGIFNDPYSGTQVDVCVITKDKTELMIGYDTPNKRMHPRQEVMLPPGTTPV LKEEIRHLVDIVDV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_353880.1.fa Sequence name : LdBPK_353880 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 3.043 CoefTot : -0.637 ChDiff : -4 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.435 0.128 0.606 MesoH : -0.290 0.396 -0.290 0.256 MuHd_075 : 26.879 16.927 7.501 4.520 MuHd_095 : 16.685 7.391 2.641 3.143 MuHd_100 : 17.088 8.012 3.720 3.567 MuHd_105 : 17.765 9.650 5.015 4.259 Hmax_075 : 1.867 3.500 -2.508 2.180 Hmax_095 : -1.225 0.525 -3.792 1.628 Hmax_100 : 1.000 1.800 -2.322 2.370 Hmax_105 : 1.983 6.183 -1.122 3.803 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9638 0.0362 DFMC : 0.9417 0.0583
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 LdBPK_353880.1 MPGFNFENVQRNLSLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCCRKIHYMAPNIMCCGAGTSAD 80 TEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQGHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGS 160 IAAMAQLEVAYKDNMTCEEAKELVTSAIHKGIFNDPYSGTQVDVCVITKDKTELMIGYDTPNKRMHPRQEVMLPPGTTPV 240 LKEEIRHLVDIVDV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_353880.1 11 NFENVQR|NL 0.090 . LdBPK_353880.1 24 EGYSAPR|TL 0.099 . LdBPK_353880.1 27 SAPRTLK|TG 0.112 . LdBPK_353880.1 38 IVGVVYK|DG 0.071 . LdBPK_353880.1 48 VLGADTR|AT 0.098 . LdBPK_353880.1 58 GSIVADK|CC 0.069 . LdBPK_353880.1 61 VADKCCR|KI 0.087 . LdBPK_353880.1 62 ADKCCRK|IH 0.077 . LdBPK_353880.1 96 SHLALHR|LE 0.082 . LdBPK_353880.1 101 HRLETGK|QS 0.072 . LdBPK_353880.1 104 ETGKQSR|VL 0.100 . LdBPK_353880.1 113 EALTLLK|RH 0.049 . LdBPK_353880.1 114 ALTLLKR|HL 0.153 . LdBPK_353880.1 118 LKRHLYR|YQ 0.144 . LdBPK_353880.1 150 PHGSTDR|LP 0.075 . LdBPK_353880.1 172 QLEVAYK|DN 0.085 . LdBPK_353880.1 181 MTCEEAK|EL 0.067 . LdBPK_353880.1 190 VTSAIHK|GI 0.077 . LdBPK_353880.1 209 DVCVITK|DK 0.065 . LdBPK_353880.1 211 CVITKDK|TE 0.057 . LdBPK_353880.1 223 GYDTPNK|RM 0.056 . LdBPK_353880.1 224 YDTPNKR|MH 0.178 . LdBPK_353880.1 228 NKRMHPR|QE 0.109 . LdBPK_353880.1 242 GTTPVLK|EE 0.062 . LdBPK_353880.1 246 VLKEEIR|HL 0.095 . ____________________________^_________________

  • Fasta :-

    >LdBPK_353880.1 ATGCCCGGGTTCAACTTTGAAAATGTGCAGCGTAACCTCAGCCTGGAGAATGAGGGCTAC TCTGCGCCACGAACGCTGAAGACCGGTACGACTATCGTCGGTGTCGTTTACAAGGACGGC GTCGTGCTCGGAGCTGACACTCGTGCCACCGAGGGCAGTATTGTGGCGGACAAGTGCTGC CGCAAGATCCACTACATGGCTCCGAATATCATGTGCTGCGGTGCCGGCACGTCGGCGGAC ACAGAGGCCGTGACGAATATGGTGTCCTCGCACCTGGCCCTGCACCGGCTCGAGACGGGC AAGCAGTCCCGCGTGCTCGAGGCACTGACGTTGCTGAAGCGCCACTTGTACCGCTACCAG GGTCACGTCAGCGCAGCGCTTGTGCTCGGTGGCGTGGATGTGGAGGGCCCGTTCTTAGCC ACCATCGCGCCACACGGCAGCACCGATCGTCTGCCCTTCGTGACGATGGGCAGCGGTAGC ATTGCCGCCATGGCTCAGTTGGAGGTTGCCTACAAAGACAACATGACGTGCGAGGAGGCC AAGGAGCTGGTGACGTCGGCTATCCACAAGGGCATCTTTAATGATCCCTACAGCGGCACC CAGGTGGACGTGTGCGTCATCACGAAGGACAAGACGGAACTCATGATCGGTTACGACACG CCGAACAAGCGCATGCACCCGCGGCAGGAAGTCATGCTCCCTCCTGGTACTACGCCGGTG CTCAAGGAGGAGATCCGTCACTTGGTTGATATAGTGGATGTCTGA
  • Download Fasta

  • Fasta :-

    MPGFNFENVQRNLSLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGSIAAMAQLEVAYKDNMTCEEA KELVTSAIHKGIFNDPYSGTQVDVCVITKDKTELMIGYDTPNKRMHPRQEVMLPPGTTPV LKEEIRHLVDIVDV

  • title: active site
  • coordinates: T30,D46,R48,K62,S158,D195,S198,G199
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_353880.114 SQRNLSLENE0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India