LdBPK_354910.1 | proteasome alpha 1 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_354910.1OTHER0.9998530.0000870.000061
No Results

  • Fasta :-

    >LdBPK_354910.1 MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTIAIRCKDAVLVATQHVIPDRLMRP DSVTALYEVTPSIGCCMTGRAPDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQ VRTQQAGLRPMGVVSTFIGMDQSDQDGSLKPQIYTVDPAGWTGGHIACAVGKKQVEAMAF LEKRQKSTKFDELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE EWLTAVAEAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_354910.1.fa Sequence name : LdBPK_354910 Sequence length : 250 VALUES OF COMPUTED PARAMETERS Coef20 : 3.558 CoefTot : -0.108 ChDiff : 1 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.629 1.759 0.239 0.616 MesoH : -0.479 0.402 -0.259 0.204 MuHd_075 : 31.812 11.730 8.215 5.562 MuHd_095 : 20.263 9.576 4.095 5.424 MuHd_100 : 7.222 4.953 1.240 3.410 MuHd_105 : 6.922 3.521 1.223 1.272 Hmax_075 : 14.233 7.583 1.353 4.422 Hmax_095 : 9.100 5.600 -0.081 4.270 Hmax_100 : 0.800 1.400 -2.246 3.020 Hmax_105 : -0.800 1.983 -1.226 2.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9339 0.0661 DFMC : 0.9237 0.0763
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 250 LdBPK_354910.1 MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTIAIRCKDAVLVATQHVIPDRLMRPDSVTALYEVTPSIGCCMTGR 80 APDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQVRTQQAGLRPMGVVSTFIGMDQSDQDGSLKPQIYTVDPAG 160 WTGGHIACAVGKKQVEAMAFLEKRQKSTKFDELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE 240 EWLTAVAEAD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_354910.1 3 ----MNR|AG 0.096 . LdBPK_354910.1 8 NRAGFDK|YI 0.082 . LdBPK_354910.1 27 QVEYAFK|AV 0.066 . LdBPK_354910.1 40 LLTIAIR|CK 0.104 . LdBPK_354910.1 42 TIAIRCK|DA 0.086 . LdBPK_354910.1 56 QHVIPDR|LM 0.079 . LdBPK_354910.1 59 IPDRLMR|PD 0.227 . LdBPK_354910.1 80 GCCMTGR|AP 0.082 . LdBPK_354910.1 85 GRAPDGR|AL 0.121 . LdBPK_354910.1 90 GRALVQR|AR 0.134 . LdBPK_354910.1 92 ALVQRAR|EE 0.072 . LdBPK_354910.1 101 ASDYHYR|YG 0.108 . LdBPK_354910.1 113 PIAVLAK|RM 0.070 . LdBPK_354910.1 114 IAVLAKR|MG 0.218 . LdBPK_354910.1 118 AKRMGDK|AQ 0.063 . LdBPK_354910.1 122 GDKAQVR|TQ 0.103 . LdBPK_354910.1 129 TQQAGLR|PM 0.095 . LdBPK_354910.1 150 DQDGSLK|PQ 0.057 . LdBPK_354910.1 172 IACAVGK|KQ 0.064 . LdBPK_354910.1 173 ACAVGKK|QV 0.172 . LdBPK_354910.1 183 AMAFLEK|RQ 0.056 . LdBPK_354910.1 184 MAFLEKR|QK 0.271 . LdBPK_354910.1 186 FLEKRQK|ST 0.077 . LdBPK_354910.1 189 KRQKSTK|FD 0.083 . LdBPK_354910.1 196 FDELTQK|EA 0.061 . LdBPK_354910.1 215 AIGTAVK|AK 0.063 . LdBPK_354910.1 217 GTAVKAK|EV 0.164 . LdBPK_354910.1 223 KEVEVGR|CT 0.092 . LdBPK_354910.1 233 ANPAFQR|VP 0.076 . ____________________________^_________________

  • Fasta :-

    >LdBPK_354910.1 ATGAACCGCGCAGGCTTCGACAAGTACATTACCGTCTTCAGCCCTGAGGGCTCGTTGTAC CAGGTGGAGTACGCATTCAAAGCCGTCACCTACCCTGGCTTGCTCACCATTGCCATTCGC TGCAAGGATGCCGTTCTGGTCGCGACGCAGCACGTGATTCCCGACCGCCTCATGCGCCCT GACTCGGTGACGGCGCTCTACGAGGTCACTCCGAGCATCGGCTGCTGCATGACCGGTCGC GCCCCCGACGGGCGCGCGCTAGTGCAGCGCGCGCGAGAGGAAGCGTCGGATTACCACTAC CGCTACGGTGTGCAGATTCCAATCGCTGTGTTGGCGAAGCGCATGGGCGACAAGGCCCAG GTGCGCACGCAACAGGCCGGCCTGCGGCCGATGGGTGTGGTGAGCACCTTCATCGGCATG GATCAGAGTGACCAGGATGGCTCGCTGAAGCCGCAGATTTACACCGTCGACCCGGCCGGC TGGACCGGTGGGCACATTGCATGCGCTGTTGGCAAGAAGCAGGTGGAGGCGATGGCATTC TTGGAGAAGCGCCAGAAGAGCACCAAGTTTGACGAGCTGACGCAGAAGGAGGCCGCGATG ATCGCGCTGGCGGCGCTGCAGAGCGCGATCGGCACGGCTGTCAAAGCGAAAGAGGTGGAG GTGGGCCGCTGCACAGCCGCCAACCCGGCCTTTCAGCGTGTGCCGAATAGCGAGGTTGAG GAGTGGCTGACCGCCGTGGCCGAGGCGGATTAA
  • Download Fasta

  • Fasta :-

    MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTIAIRCKDAVLVATQHVIPDRLMRP DSVTALYEVTPSIGCCMTGRAPDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQ VRTQQAGLRPMGVVSTFIGMDQSDQDGSLKPQIYTVDPAGWTGGHIACAVGKKQVEAMAF LEKRQKSTKFDELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE EWLTAVAEAD

  • title: active site
  • coordinates: L34,Q50,V52,A65,K172
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_354910.1187 SKRQKSTKFD0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India