LdBPK_360340.1 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_360340.1OTHER0.9951070.0048060.000087
No Results

  • Fasta :-

    >LdBPK_360340.1 MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLIACTGENGPRVNFTEY VKCNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVNCLFAGYDMPVSEDDDG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNSYFFVKAVTKNGVEVITAVH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_360340.1.fa Sequence name : LdBPK_360340 Sequence length : 206 VALUES OF COMPUTED PARAMETERS Coef20 : 4.310 CoefTot : 0.141 ChDiff : -5 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.253 1.294 0.264 0.553 MesoH : -0.453 0.275 -0.237 0.247 MuHd_075 : 19.675 12.587 5.781 3.166 MuHd_095 : 6.064 8.600 4.051 1.855 MuHd_100 : 10.751 4.021 2.935 1.367 MuHd_105 : 19.583 4.176 3.531 2.327 Hmax_075 : 18.783 19.600 4.710 5.472 Hmax_095 : 6.700 13.038 1.858 3.964 Hmax_100 : 10.800 13.100 1.857 3.910 Hmax_105 : 11.725 10.000 1.431 3.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9302 0.0698 DFMC : 0.9182 0.0818
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 206 LdBPK_360340.1 MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLIACTGENGPRVNFTEYVKCNLMLNRMRQHGRHSSCD 80 STANFMRNCLASAIRSREGAYQVNCLFAGYDMPVSEDDDGAVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRP 160 DLTQQEGLELMQKCCDEVKRRVVISNSYFFVKAVTKNGVEVITAVH 240 ................................................................................ 80 ................................................................................ 160 .............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_360340.1 9 ETAIAFR|CQ 0.091 . LdBPK_360340.1 28 NAFYYIK|IT 0.067 . LdBPK_360340.1 35 ITDAEDK|IT 0.062 . LdBPK_360340.1 54 TGENGPR|VN 0.079 . LdBPK_360340.1 62 NFTEYVK|CN 0.053 . LdBPK_360340.1 69 CNLMLNR|MR 0.100 . LdBPK_360340.1 71 LMLNRMR|QH 0.084 . LdBPK_360340.1 75 RMRQHGR|HS 0.118 . LdBPK_360340.1 87 STANFMR|NC 0.098 . LdBPK_360340.1 95 CLASAIR|SR 0.121 . LdBPK_360340.1 97 ASAIRSR|EG 0.090 . LdBPK_360340.1 159 LLDCLWR|PD 0.080 . LdBPK_360340.1 173 GLELMQK|CC 0.065 . LdBPK_360340.1 179 KCCDEVK|RR 0.055 . LdBPK_360340.1 180 CCDEVKR|RV 0.195 . LdBPK_360340.1 181 CDEVKRR|VV 0.166 . LdBPK_360340.1 192 NSYFFVK|AV 0.103 . LdBPK_360340.1 196 FVKAVTK|NG 0.059 . ____________________________^_________________

  • Fasta :-

    >LdBPK_360340.1 ATGGCGGAGACTGCGATTGCGTTCCGCTGCCAGGACTACGTCATGGTCGCTGCGGCCGGC CTCAACGCCTTCTACTACATCAAGATAACCGACGCGGAGGACAAGATTACGCAGCTTGAC ACACATCAGCTGATCGCGTGCACTGGCGAGAATGGCCCTCGCGTGAACTTCACCGAATAC GTAAAGTGCAACCTCATGCTCAACCGCATGCGCCAGCACGGGCGCCACAGCAGCTGCGAT TCAACGGCGAACTTCATGCGCAACTGCCTCGCCAGTGCGATCCGCAGTCGCGAGGGGGCT TACCAGGTGAACTGCCTCTTTGCCGGCTACGACATGCCGGTTTCCGAGGATGACGACGGT GCGGTGGGACCGCAGCTGTTTTACTTGGACTACCTCGGCACCCTGCAGGCTGTGCCGTAT GGTTGCCATGGCTACGGAGCTTGCTTTGTGACTGCTCTGCTAGATTGCCTCTGGCGTCCT GATTTGACCCAACAGGAGGGCCTTGAGCTCATGCAGAAGTGCTGCGATGAGGTGAAGCGC CGCGTCGTCATCAGCAACTCATACTTCTTTGTGAAGGCGGTGACGAAGAACGGAGTAGAG GTCATCACGGCGGTGCACTAG
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  • Fasta :-

    MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLIACTGENGPRVNFTEY VKCNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVNCLFAGYDMPVSEDDDG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNSYFFVKAVTKNGVEVITAVH

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_360340.177 SHGRHSSCDS0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India