LdBPK_361670.1 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_361670.1OTHER0.9998820.0000310.000087
No Results

  • Fasta :-

    >LdBPK_361670.1 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDFVVLAALKRSPVAELSSY QEKVFEVDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRH IQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFEHF TDCTLDELVAHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR PEDRVAAADDEEEVLHEQPLDVEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_361670.1.fa Sequence name : LdBPK_361670 Sequence length : 264 VALUES OF COMPUTED PARAMETERS Coef20 : 3.727 CoefTot : -0.247 ChDiff : -13 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.294 1.082 -0.115 0.422 MesoH : -1.031 0.168 -0.496 0.126 MuHd_075 : 30.200 14.818 7.934 5.959 MuHd_095 : 17.818 9.039 2.981 5.066 MuHd_100 : 18.566 9.173 3.486 5.440 MuHd_105 : 9.862 5.946 1.918 3.935 Hmax_075 : 1.575 -0.817 -1.938 1.902 Hmax_095 : 2.600 -0.350 -2.671 2.756 Hmax_100 : 1.000 0.500 -2.089 3.200 Hmax_105 : -2.217 -3.000 -3.744 1.633 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8948 0.1052 DFMC : 0.9172 0.0828
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 264 LdBPK_361670.1 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDFVVLAALKRSPVAELSSYQEKVFEVDEHVGMSISGLVA 80 DGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRHIQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKAT 160 AMGVRSQASRTYLEKHFEHFTDCTLDELVAHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR 240 PEDRVAAADDEEEVLHEQPLDVEE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_361670.1 3 ----MFK|NE 0.062 . LdBPK_361670.1 18 TWSPTGR|LF 0.114 . LdBPK_361670.1 39 SATVGVK|GR 0.063 . LdBPK_361670.1 41 TVGVKGR|DF 0.113 . LdBPK_361670.1 50 VVLAALK|RS 0.054 . LdBPK_361670.1 51 VLAALKR|SP 0.246 . LdBPK_361670.1 63 LSSYQEK|VF 0.083 . LdBPK_361670.1 83 GLVADGR|VL 0.095 . LdBPK_361670.1 87 DGRVLAR|FL 0.122 . LdBPK_361670.1 90 VLARFLR|TE 0.197 . LdBPK_361670.1 97 TECMNYR|YM 0.097 . LdBPK_361670.1 116 ADMIGEK|HQ 0.065 . LdBPK_361670.1 119 IGEKHQR|HI 0.104 . LdBPK_361670.1 126 HIQFSGK|RP 0.067 . LdBPK_361670.1 127 IQFSGKR|PF 0.186 . LdBPK_361670.1 140 LLAGYDR|QG 0.075 . LdBPK_361670.1 158 GDVYDYK|AT 0.080 . LdBPK_361670.1 165 ATAMGVR|SQ 0.090 . LdBPK_361670.1 170 VRSQASR|TY 0.111 . LdBPK_361670.1 175 SRTYLEK|HF 0.074 . LdBPK_361670.1 194 LVAHALK|AL 0.061 . LdBPK_361670.1 209 GVELNVK|NT 0.060 . LdBPK_361670.1 218 TIAIVGK|DT 0.081 . LdBPK_361670.1 231 FEEESAR|RY 0.094 . LdBPK_361670.1 232 EEESARR|YL 0.132 . LdBPK_361670.1 238 RYLDGFK|MR 0.053 . LdBPK_361670.1 240 LDGFKMR|PE 0.109 . LdBPK_361670.1 244 KMRPEDR|VA 0.093 . ____________________________^_________________

  • Fasta :-

    >LdBPK_361670.1 ATGTTCAAGAACGAGTACGATAGCGACATCACGACCTGGAGCCCGACGGGCCGGCTCTTT CAGATCGAGTATGCGAATGAGGCTGTCAACAACGGCTCCGCGACGGTTGGCGTGAAAGGG AGGGACTTTGTCGTGCTCGCCGCACTCAAGCGCAGCCCCGTCGCGGAGCTGTCCTCGTAC CAAGAAAAGGTCTTCGAGGTTGACGAGCATGTTGGCATGTCCATCTCGGGCCTCGTGGCG GATGGCCGCGTGCTTGCTCGCTTCCTGCGCACAGAATGCATGAACTACCGCTACATGTAT AGCCATGGTATGCCGATGAATCAAATGGCGGACATGATCGGCGAGAAGCACCAGCGCCAC ATCCAATTCAGCGGCAAGCGTCCTTTCGGCGTTGGCCTGCTGCTTGCTGGTTACGATCGC CAGGGACCGCACCTGTACCAGACGGTGCCGTCCGGTGACGTTTACGACTACAAGGCCACG GCGATGGGCGTGCGCTCGCAGGCGTCCCGCACGTATTTGGAGAAGCATTTCGAGCACTTC ACCGACTGCACCCTCGATGAGCTCGTGGCGCACGCACTGAAGGCCCTCGCTTCCGCGACA TCGGAGGGCGTGGAGTTGAATGTAAAGAACACCACCATCGCCATCGTAGGCAAGGATACC CCCTTCACCATCTTTGAGGAGGAGAGCGCGCGCAGGTACCTGGATGGGTTCAAGATGCGT CCAGAAGACCGCGTGGCGGCGGCGGACGATGAGGAGGAGGTTCTGCACGAGCAGCCTCTG GACGTCGAGGAATAG
  • Download Fasta

  • Fasta :-

    MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDFVVLAALKRSPVAELSSY QEKVFEVDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRH IQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFEHF TDCTLDELVAHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR PEDRVAAADDEEEVLHEQPLDVEE

  • title: active site
  • coordinates: S33,L49,R51,K63,V164
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_361670.1124 SHIQFSGKRP0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India