LdBPK_361730.1 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_361730.1OTHER0.9995410.0003700.000089
No Results

  • Fasta :-

    >LdBPK_361730.1 MFADFESVMSSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDA VTADPLDSSRYLHGENRCWTLTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRAS TGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGMECRLWELRNGSRITVAAASK ILANITYAYRNHGLSMGTMLAGWDQFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFP SQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_361730.1.fa Sequence name : LdBPK_361730 Sequence length : 302 VALUES OF COMPUTED PARAMETERS Coef20 : 4.009 CoefTot : 0.141 ChDiff : -4 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.859 1.124 0.078 0.476 MesoH : -0.482 0.340 -0.298 0.195 MuHd_075 : 18.867 11.133 5.926 2.593 MuHd_095 : 8.399 0.161 4.552 1.474 MuHd_100 : 8.005 8.041 4.175 2.552 MuHd_105 : 18.509 14.429 5.480 4.061 Hmax_075 : 17.617 10.383 1.307 3.908 Hmax_095 : 9.400 7.200 2.256 2.677 Hmax_100 : 3.900 7.600 0.745 3.200 Hmax_105 : 14.800 13.900 0.579 5.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9695 0.0305 DFMC : 0.9467 0.0533
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 302 LdBPK_361730.1 MFADFESVMSSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDAVTADPLDSSRYLHGENRCWT 80 LTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRASTGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGM 160 ECRLWELRNGSRITVAAASKILANITYAYRNHGLSMGTMLAGWDQFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT 240 GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFPSQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_361730.1 20 TLDDCPR|VG 0.071 . LdBPK_361730.1 44 LSLCSYR|RA 0.116 . LdBPK_361730.1 45 SLCSYRR|AP 0.124 . LdBPK_361730.1 53 PQQTTER|SP 0.091 . LdBPK_361730.1 70 DPLDSSR|YL 0.109 . LdBPK_361730.1 77 YLHGENR|CW 0.082 . LdBPK_361730.1 89 ASCPVPR|AI 0.115 . LdBPK_361730.1 93 VPRAIPK|ID 0.080 . LdBPK_361730.1 97 IPKIDMK|KG 0.062 . LdBPK_361730.1 98 PKIDMKK|GT 0.111 . LdBPK_361730.1 106 TTTLAFR|FN 0.120 . LdBPK_361730.1 118 IVAVDSR|AS 0.101 . LdBPK_361730.1 132 ASQTVLK|VL 0.065 . LdBPK_361730.1 156 DCQYWER|VL 0.092 . LdBPK_361730.1 163 VLGMECR|LW 0.086 . LdBPK_361730.1 168 CRLWELR|NG 0.084 . LdBPK_361730.1 172 ELRNGSR|IT 0.078 . LdBPK_361730.1 180 TVAAASK|IL 0.062 . LdBPK_361730.1 190 NITYAYR|NH 0.081 . LdBPK_361730.1 216 LYYVDDK|GS 0.071 . LdBPK_361730.1 219 VDDKGSR|VK 0.069 . LdBPK_361730.1 221 DKGSRVK|QD 0.060 . LdBPK_361730.1 243 VLDTGYR|KD 0.071 . LdBPK_361730.1 244 LDTGYRK|DL 0.087 . LdBPK_361730.1 256 DACDLAR|RS 0.071 . LdBPK_361730.1 257 ACDLARR|SI 0.191 . LdBPK_361730.1 265 IFHATYR|DG 0.114 . LdBPK_361730.1 281 VYHVHEK|GW 0.076 . LdBPK_361730.1 285 HEKGWTK|IS 0.063 . LdBPK_361730.1 288 GWTKISR|DD 0.118 . LdBPK_361730.1 293 SRDDQTK|LY 0.077 . LdBPK_361730.1 297 QTKLYDR|YF 0.079 . ____________________________^_________________

  • Fasta :-

    >LdBPK_361730.1 ATGTTCGCTGATTTCGAGTCCGTCATGTCGTCCAACTTCACGTTGGACGACTGCCCGAGG GTGGGCCCCTTTACGTACCACAACATGGATGAGGACACGCTGGAGGAACCGCTGTCACTG TGCTCCTACAGACGCGCTCCACAGCAAACCACCGAAAGATCGCCGGCTTCCTGCGATGCT GTGACGGCCGACCCGCTCGACTCCAGCCGCTACCTCCACGGCGAGAACCGTTGCTGGACG CTGACGGCGTCGTGCCCAGTGCCGCGAGCAATCCCAAAGATTGACATGAAGAAGGGTACG ACGACCCTCGCCTTCCGTTTCAACGGCGGCATCATCGTTGCCGTCGACTCGCGTGCGTCG ACGGGGCAGTACATCGCATCACAGACGGTGCTGAAGGTCCTGGAGATCAACGACTACCTA CTGGGTACGCTTGCTGGTGGTGCAGCCGATTGCCAATACTGGGAGCGCGTGCTTGGTATG GAGTGCCGCCTGTGGGAGTTGCGCAACGGCAGCCGCATCACCGTCGCGGCGGCGAGCAAG ATTCTGGCGAACATCACGTACGCCTACCGCAACCACGGACTTTCGATGGGCACGATGCTG GCCGGCTGGGATCAGTTTGGCCCTTCGCTCTACTACGTGGACGACAAGGGCTCTCGCGTG AAACAGGACCTCTTCAGTGTCGGCTCCGGCTCCATTTACGCTTACGGTGTGCTTGACACG GGCTACCGCAAGGACCTCTCTGTCGAGGATGCGTGCGACCTGGCGCGCCGCTCCATCTTC CACGCGACGTACCGCGATGGCGCCTCTGGCGGTATCGTGACAGTGTACCACGTGCACGAG AAGGGCTGGACCAAGATCTCGCGCGATGACCAGACGAAGCTCTACGACCGCTACTTTCCG TCCCAGTAG
  • Download Fasta

  • Fasta :-

    MFADFESVMSSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDA VTADPLDSSRYLHGENRCWTLTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRAS TGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGMECRLWELRNGSRITVAAASK ILANITYAYRNHGLSMGTMLAGWDQFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFP SQ

  • title: active site
  • coordinates: T100,D116,R118,K132,S229,D266,S269,G270
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_361730.1247 SRKDLSVEDA0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India