LmjF.01.0610 | DNA-damage inducible protein DDI1-like protein

_IDPredictionOTHERSPmTPCS_Position
LmjF.01.0610OTHER0.8641600.0025830.133258
No Results

  • Fasta :-

    >LmjF.01.0610 MVQLTINNARGVTLCRVSLPANATVQQLLLQLTVAKPELRQAQAIRNDVRHVTHRLTPAS TTTTTTTSVVSSNAQTLLQAGLVGQGATAETLVVLMAADAPAAASSAAAAAPSPTKAVAA QILDLFGCASASPSAGVRSQASVVPSTMDERQLELQRRIYAQIQQQQIDENLANALEYTP EAFAKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMRGVAVGVGR QEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNIN VPFLPENDLPALAALGDDENAMHAPRHQDPATTATTASNPAAPVLSEGERQARIEGFMTV SGITDPTQAAELLEAADWNPNVAAALLFDT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/238 Sequence name : 238 Sequence length : 390 VALUES OF COMPUTED PARAMETERS Coef20 : 4.533 CoefTot : -0.091 ChDiff : -8 ZoneTo : 37 KR : 3 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.506 0.116 0.635 MesoH : 0.648 0.777 -0.045 0.348 MuHd_075 : 32.770 25.185 10.867 7.437 MuHd_095 : 22.537 18.331 6.616 5.775 MuHd_100 : 22.914 17.623 6.655 5.521 MuHd_105 : 23.446 17.097 7.360 5.597 Hmax_075 : 14.467 18.000 2.771 5.760 Hmax_095 : 15.400 20.900 2.986 6.070 Hmax_100 : 15.800 20.800 3.459 5.940 Hmax_105 : 12.400 17.850 4.034 4.611 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1738 0.8262 DFMC : 0.1736 0.8264 This protein is probably imported in mitochondria. f(Ser) = 0.0270 f(Arg) = 0.0541 CMi = 0.18553 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 390 LmjF.01.0610 MVQLTINNARGVTLCRVSLPANATVQQLLLQLTVAKPELRQAQAIRNDVRHVTHRLTPASTTTTTTTSVVSSNAQTLLQA 80 GLVGQGATAETLVVLMAADAPAAASSAAAAAPSPTKAVAAQILDLFGCASASPSAGVRSQASVVPSTMDERQLELQRRIY 160 AQIQQQQIDENLANALEYTPEAFAKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMRGVAVGVGR 240 QEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPENDLPALAALGDDEN 320 AMHAPRHQDPATTATTASNPAAPVLSEGERQARIEGFMTVSGITDPTQAAELLEAADWNPNVAAALLFDT 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.01.0610 10 LTINNAR|GV 0.135 . LmjF.01.0610 16 RGVTLCR|VS 0.079 . LmjF.01.0610 36 LQLTVAK|PE 0.059 . LmjF.01.0610 40 VAKPELR|QA 0.109 . LmjF.01.0610 46 RQAQAIR|ND 0.090 . LmjF.01.0610 50 AIRNDVR|HV 0.127 . LmjF.01.0610 55 VRHVTHR|LT 0.144 . LmjF.01.0610 116 AAPSPTK|AV 0.079 . LmjF.01.0610 138 SPSAGVR|SQ 0.161 . LmjF.01.0610 151 PSTMDER|QL 0.086 . LmjF.01.0610 157 RQLELQR|RI 0.088 . LmjF.01.0610 158 QLELQRR|IY 0.185 . LmjF.01.0610 185 TPEAFAK|VT 0.082 . LmjF.01.0610 201 INQVLVK|AF 0.078 . LmjF.01.0610 215 QNSIMNK|RT 0.062 . LmjF.01.0610 216 NSIMNKR|TA 0.273 . LmjF.01.0610 220 NKRTAER|CG 0.080 . LmjF.01.0610 225 ERCGLMR|LV 0.129 . LmjF.01.0610 230 MRLVDVR|MR 0.109 . LmjF.01.0610 232 LVDVRMR|GV 0.123 . LmjF.01.0610 240 VAVGVGR|QE 0.095 . LmjF.01.0610 246 RQEICGR|IH 0.083 . LmjF.01.0610 281 IGLDQLK|RH 0.055 . LmjF.01.0610 282 GLDQLKR|HQ 0.146 . LmjF.01.0610 290 QMMIDLK|HN 0.062 . LmjF.01.0610 326 NAMHAPR|HQ 0.123 . LmjF.01.0610 350 VLSEGER|QA 0.127 . LmjF.01.0610 353 EGERQAR|IE 0.232 . ____________________________^_________________

  • Fasta :-

    >LmjF.01.0610 ATGGTGCAGCTCACCATCAACAACGCCAGGGGAGTGACCCTGTGCCGAGTTAGCCTCCCC GCCAACGCGACGGTGCAGCAGTTGCTGCTGCAACTCACCGTGGCGAAGCCGGAGCTGCGC CAAGCACAAGCAATTCGCAATGATGTCCGTCACGTGACGCACCGCCTCACGCCAGCATCC ACCACCACCACCACCACCACAAGTGTGGTCTCATCCAACGCACAGACACTGTTGCAAGCG GGGCTAGTTGGGCAAGGTGCAACGGCGGAAACGTTGGTAGTGCTAATGGCGGCTGATGCT CCTGCCGCGGCGTCATCGGCTGCAGCGGCGGCGCCATCCCCAACGAAGGCCGTCGCAGCA CAAATTCTGGATCTGTTCGGGTGTGCCTCGGCGTCTCCGTCGGCAGGGGTGCGATCCCAA GCCAGTGTCGTCCCCAGCACGATGGACGAGCGCCAGCTAGAGCTGCAGCGCCGCATCTAC GCTCAAATCCAGCAGCAGCAGATAGACGAGAATCTCGCCAACGCGCTCGAGTACACGCCG GAGGCGTTCGCGAAGGTAACGATGCTCTACGTGCCGTGCACCATCAACCAGGTGCTAGTG AAAGCCTTCGTCGACTCCGGCGCGCAGAACAGCATCATGAACAAGCGCACGGCGGAGCGG TGTGGATTGATGCGGCTCGTCGACGTCCGCATGCGTGGCGTCGCCGTCGGAGTAGGGCGG CAGGAGATCTGCGGTCGCATTCACATGACCCCTGTGAACCTCGCAGGCATGTACATCCCC TTCGCCTTCTACGTGATCGAGGACCAGGCAATGGACTTGATCATCGGCCTCGACCAACTG AAGCGCCATCAGATGATGATAGACCTCAAGCATAACTGTCTCACCATCGACAACATCAAC GTCCCATTCTTGCCGGAGAACGATTTGCCTGCGTTGGCGGCGCTGGGCGACGACGAGAAT GCGATGCACGCGCCACGTCACCAGGACCCGGCGACGACAGCCACCACCGCTTCCAACCCT GCTGCGCCGGTGCTCTCGGAGGGCGAGCGGCAGGCTCGGATTGAAGGTTTCATGACGGTC TCAGGTATAACGGACCCCACACAGGCGGCGGAGTTGCTGGAAGCCGCCGACTGGAACCCC AACGTGGCGGCAGCGCTCCTCTTCGACACGTAA
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  • Fasta :-

    MVQLTINNARGVTLCRVSLPANATVQQLLLQLTVAKPELRQAQAIRNDVRHVTHRLTPAS TTTTTTTSVVSSNAQTLLQAGLVGQGATAETLVVLMAADAPAAASSAAAAAPSPTKAVAA QILDLFGCASASPSAGVRSQASVVPSTMDERQLELQRRIYAQIQQQQIDENLANALEYTP EAFAKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMRGVAVGVGR QEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNIN VPFLPENDLPALAALGDDENAMHAPRHQDPATTATTASNPAAPVLSEGERQARIEGFMTV SGITDPTQAAELLEAADWNPNVAAALLFDT

  • title: catalytic motif
  • coordinates: D205,S206,G207
No Results
No Results
IDSitePeptideScoreMethod
LmjF.01.0610146 SSVVPSTMDE0.994unsp

LmjF.01.0610      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India