LmjF.06.0140 | 20S proteasome beta 6 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.06.0140OTHER0.9994900.0001250.000385
No Results

  • Fasta :-

    >LmjF.06.0140 MIEDHAEYGHSHYPQKLASSTLTLPKQGVKQQQWSPYHDNGGTTAAIAGKDFVILAGDTR LNGDYCLHSRHDQSKIFQLTPYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGKVPPTK AIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLALLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/731 Sequence name : 731 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 2.721 CoefTot : 0.000 ChDiff : -2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.594 0.976 -0.003 0.476 MesoH : -0.462 0.133 -0.335 0.201 MuHd_075 : 6.181 6.961 1.289 1.643 MuHd_095 : 26.871 18.154 7.172 5.968 MuHd_100 : 14.023 11.461 3.928 3.552 MuHd_105 : 9.354 2.720 0.764 0.748 Hmax_075 : -5.250 0.525 -3.615 1.540 Hmax_095 : 5.425 4.725 -0.646 3.675 Hmax_100 : -3.400 1.700 -2.996 2.720 Hmax_105 : -3.300 -1.900 -4.289 1.130 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9614 0.0386 DFMC : 0.9825 0.0175
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 LmjF.06.0140 MIEDHAEYGHSHYPQKLASSTLTLPKQGVKQQQWSPYHDNGGTTAAIAGKDFVILAGDTRLNGDYCLHSRHDQSKIFQLT 80 PYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGKVPPTKAIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDA 160 VGSTEPFLYGTRGSAASFLEPVLDCLINRQHMTAQAPPEMTKEETLALLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE 240 SFELRKD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.06.0140 16 HSHYPQK|LA 0.086 . LmjF.06.0140 26 STLTLPK|QG 0.063 . LmjF.06.0140 30 LPKQGVK|QQ 0.060 . LmjF.06.0140 50 TAAIAGK|DF 0.071 . LmjF.06.0140 60 ILAGDTR|LN 0.092 . LmjF.06.0140 70 DYCLHSR|HD 0.084 . LmjF.06.0140 75 SRHDQSK|IF 0.076 . LmjF.06.0140 94 NGMQADR|LQ 0.078 . LmjF.06.0140 102 QLQQMLK|YR 0.057 . LmjF.06.0140 104 QQMLKYR|VK 0.095 . LmjF.06.0140 106 MLKYRVK|WY 0.067 . LmjF.06.0140 115 QYNNGGK|VP 0.057 . LmjF.06.0140 120 GKVPPTK|AI 0.086 . LmjF.06.0140 133 STMLYHR|RF 0.075 . LmjF.06.0140 134 TMLYHRR|FF 0.147 . LmjF.06.0140 172 PFLYGTR|GS 0.071 . LmjF.06.0140 189 LDCLINR|QH 0.086 . LmjF.06.0140 202 APPEMTK|EE 0.058 . LmjF.06.0140 210 ETLALLK|NA 0.057 . LmjF.06.0140 219 FTGAAER|DI 0.112 . LmjF.06.0140 234 SFFIITK|DG 0.062 . LmjF.06.0140 239 TKDGVQR|ES 0.096 . LmjF.06.0140 245 RESFELR|KD 0.103 . LmjF.06.0140 246 ESFELRK|D- 0.091 . ____________________________^_________________

  • Fasta :-

    >LmjF.06.0140 ATGATCGAGGACCACGCCGAGTACGGCCACAGCCACTACCCCCAGAAGCTGGCCAGCTCT ACCCTCACCCTGCCGAAGCAGGGGGTGAAGCAGCAGCAGTGGAGCCCCTACCATGACAAT GGCGGCACGACGGCCGCTATCGCTGGCAAGGACTTCGTCATCCTCGCTGGTGACACTCGT CTGAACGGTGACTACTGCCTTCACAGCCGCCATGATCAGAGCAAGATCTTCCAGCTGACG CCGTACACGTATATGGCGAGCAACGGCATGCAGGCGGACCGACTGCAGCTCCAGCAGATG CTCAAGTACCGCGTCAAGTGGTACCAGTACAACAACGGCGGTAAGGTGCCGCCGACCAAG GCGATTGCGCAGCTCATGTCCACGATGCTGTACCACCGTCGCTTCTTCCCTTACTACACA TTCAATATGGTCGTTGGTCTGGATGAAGAGGGGCACGGCGTGTGCTACAGCTACGACGCC GTCGGCTCAACGGAGCCCTTCCTGTACGGCACCCGGGGTAGTGCGGCCAGCTTCTTGGAG CCGGTGCTCGACTGCCTCATCAACCGCCAGCATATGACCGCTCAGGCACCGCCGGAGATG ACAAAGGAGGAGACGCTGGCGCTGCTCAAGAACGCCTTCACCGGCGCAGCCGAGCGCGAC ATTTACACTGGCGACTCCGTCTCCTTCTTCATCATCACGAAGGACGGCGTGCAGCGGGAG AGCTTCGAGCTGCGCAAGGACTGA
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  • Fasta :-

    MIEDHAEYGHSHYPQKLASSTLTLPKQGVKQQQWSPYHDNGGTTAAIAGKDFVILAGDTR LNGDYCLHSRHDQSKIFQLTPYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGKVPPTK AIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLALLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD

  • title: active site
  • coordinates: G42,D58,R60,K75,S174,D220,T223,G224
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.06.014069 SYCLHSRHDQ0.994unspLmjF.06.0140201 TPPEMTKEET0.991unsp

LmjF.06.0140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India