LmjF.09.1300 | PPPDE putative peptidase domain containing protein, putative

  • Computed_GO_Component_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmjF.09.1300OTHER0.9933670.0056600.000973
No Results

  • Fasta :-

    >LmjF.09.1300 MHATKSGVTTLSASAGNSDVPVMSAAYEDAARQPNAVFVNVYDIMKSNSWLWSVGLGVHH AGIQVYDKEYQYGRCEEGSGVRAVEPRHSPPHIFREQFFVGQTQLSALEVRKLVARLEQC DTWQGSKYHLVKHNCIHFAQAFCEALLPPHVRVAQMRTALPSTYQSAYMEEVEVDGQQYS LPVLIPPHVSRLSNYATSYLPESALQMLDSMDNPFSTP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/108 Sequence name : 108 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 4.003 CoefTot : 0.007 ChDiff : -5 ZoneTo : 18 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.941 0.924 -0.078 0.530 MesoH : -0.527 0.049 -0.407 0.164 MuHd_075 : 2.048 1.675 1.176 2.008 MuHd_095 : 16.937 15.635 7.153 4.271 MuHd_100 : 14.583 13.731 5.646 3.296 MuHd_105 : 9.221 9.103 3.281 1.951 Hmax_075 : 9.400 4.800 0.851 1.880 Hmax_095 : 13.200 9.800 1.836 3.710 Hmax_100 : 13.200 9.800 1.705 3.710 Hmax_105 : 12.200 7.875 1.388 3.089 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9039 0.0961 DFMC : 0.8508 0.1492
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 LmjF.09.1300 MHATKSGVTTLSASAGNSDVPVMSAAYEDAARQPNAVFVNVYDIMKSNSWLWSVGLGVHHAGIQVYDKEYQYGRCEEGSG 80 VRAVEPRHSPPHIFREQFFVGQTQLSALEVRKLVARLEQCDTWQGSKYHLVKHNCIHFAQAFCEALLPPHVRVAQMRTAL 160 PSTYQSAYMEEVEVDGQQYSLPVLIPPHVSRLSNYATSYLPESALQMLDSMDNPFSTP 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.09.1300 5 --MHATK|SG 0.077 . LmjF.09.1300 32 AYEDAAR|QP 0.089 . LmjF.09.1300 46 NVYDIMK|SN 0.072 . LmjF.09.1300 68 GIQVYDK|EY 0.067 . LmjF.09.1300 74 KEYQYGR|CE 0.092 . LmjF.09.1300 82 EEGSGVR|AV 0.095 . LmjF.09.1300 87 VRAVEPR|HS 0.139 . LmjF.09.1300 95 SPPHIFR|EQ 0.115 . LmjF.09.1300 111 LSALEVR|KL 0.094 . LmjF.09.1300 112 SALEVRK|LV 0.101 . LmjF.09.1300 116 VRKLVAR|LE 0.082 . LmjF.09.1300 127 DTWQGSK|YH 0.055 . LmjF.09.1300 132 SKYHLVK|HN 0.080 . LmjF.09.1300 152 LLPPHVR|VA 0.084 . LmjF.09.1300 157 VRVAQMR|TA 0.143 . LmjF.09.1300 191 IPPHVSR|LS 0.093 . ____________________________^_________________

  • Fasta :-

    >LmjF.09.1300 ATGCACGCCACGAAATCCGGTGTTACGACCCTCTCGGCTAGCGCCGGCAACTCGGATGTA CCGGTTATGTCCGCAGCCTACGAGGACGCAGCTCGCCAGCCCAACGCTGTCTTCGTCAAC GTGTACGATATTATGAAGTCCAACTCCTGGCTTTGGTCGGTCGGCCTTGGCGTGCACCAC GCTGGTATTCAGGTGTACGACAAGGAGTACCAGTACGGTCGCTGCGAGGAGGGCAGCGGC GTCCGTGCCGTCGAGCCTCGCCACTCGCCGCCGCACATTTTCCGCGAGCAGTTCTTTGTC GGGCAGACACAGCTGAGCGCTCTAGAAGTGCGGAAGCTTGTTGCCAGGCTCGAGCAGTGT GACACTTGGCAGGGCAGCAAGTATCACCTCGTGAAGCACAACTGCATCCACTTCGCGCAA GCTTTCTGCGAAGCGCTGCTGCCGCCTCACGTACGGGTGGCGCAGATGCGCACGGCGCTC CCGTCTACGTACCAGAGTGCGTACATGGAGGAGGTCGAGGTGGATGGCCAGCAGTACTCA CTGCCGGTGCTCATTCCTCCCCATGTGAGTCGCCTGAGCAACTACGCCACCTCCTACCTG CCAGAGTCTGCTCTGCAGATGCTGGACTCCATGGACAACCCCTTCAGCACCCCCTGA
  • Download Fasta

  • Fasta :-

    MHATKSGVTTLSASAGNSDVPVMSAAYEDAARQPNAVFVNVYDIMKSNSWLWSVGLGVHH AGIQVYDKEYQYGRCEEGSGVRAVEPRHSPPHIFREQFFVGQTQLSALEVRKLVARLEQC DTWQGSKYHLVKHNCIHFAQAFCEALLPPHVRVAQMRTALPSTYQSAYMEEVEVDGQQYS LPVLIPPHVSRLSNYATSYLPESALQMLDSMDNPFSTP

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IDSitePeptideScoreMethod
LmjF.09.130089 SEPRHSPPHI0.991unsp

LmjF.09.1300      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India