LmjF.11.0620 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LmjF.11.0620OTHER0.9994950.0003330.000172
No Results

  • Fasta :-

    >LmjF.11.0620 MTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPH SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYYATGEQDFVPDVLIDMATLTGAQGVA TGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSSSS AGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/739 Sequence name : 739 Sequence length : 292 VALUES OF COMPUTED PARAMETERS Coef20 : 3.099 CoefTot : -0.363 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.547 0.277 0.600 MesoH : -0.035 0.534 -0.242 0.253 MuHd_075 : 12.669 12.442 4.237 4.204 MuHd_095 : 15.919 6.879 3.878 1.369 MuHd_100 : 15.958 7.769 5.316 1.609 MuHd_105 : 15.971 10.892 6.294 2.287 Hmax_075 : 3.700 11.800 0.618 5.000 Hmax_095 : 4.112 3.850 -0.760 2.651 Hmax_100 : 1.300 6.500 -0.197 2.390 Hmax_105 : 11.200 7.117 2.031 4.188 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9756 0.0244 DFMC : 0.9762 0.0238
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 292 LmjF.11.0620 MTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGGLALKPAAHMTNMKTDMGGSA 80 GVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYYATGEQ 160 DFVPDVLIDMATLTGAQGVATGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSSSS 240 AGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.11.0620 5 --MTVIK|GD 0.068 . LmjF.11.0620 10 IKGDELR|EK 0.114 . LmjF.11.0620 12 GDELREK|GY 0.084 . LmjF.11.0620 22 GIYAVGK|CA 0.069 . LmjF.11.0620 34 AHLVTLR|YR 0.076 . LmjF.11.0620 36 LVTLRYR|NP 0.091 . LmjF.11.0620 45 NAAEGAK|NI 0.073 . LmjF.11.0620 52 NIAMVGK|GI 0.075 . LmjF.11.0620 64 CGGLALK|PA 0.063 . LmjF.11.0620 73 AHMTNMK|TD 0.064 . LmjF.11.0620 91 AFIAVVR|SM 0.120 . LmjF.11.0620 94 AVVRSMK|MQ 0.138 . LmjF.11.0620 97 RSMKMQR|TH 0.094 . LmjF.11.0620 123 IGPHSYR|ND 0.097 . LmjF.11.0620 131 DDVVVMK|SG 0.089 . LmjF.11.0620 134 VVMKSGK|SV 0.130 . LmjF.11.0620 146 NTDAEGR|IV 0.090 . LmjF.11.0620 184 GVATGSK|HA 0.077 . LmjF.11.0620 197 SDAEAEK|DM 0.073 . LmjF.11.0620 225 YHEEVYK|SP 0.082 . LmjF.11.0620 232 SPCADMR|NI 0.104 . LmjF.11.0620 257 EQHLSER|FR 0.105 . LmjF.11.0620 259 HLSERFR|GP 0.136 . LmjF.11.0620 290 LVFEFLR|QH 0.080 . ____________________________^_________________

  • Fasta :-

    >LmjF.11.0620 ATGACTGTGATCAAGGGTGATGAGCTGCGCGAGAAGGGCTACGGCGGCATCTACGCTGTC GGCAAGTGTGCGCAGTACCCGGCGCACCTGGTGACGCTGCGCTACAGGAACCCGAACGCC GCTGAGGGCGCCAAGAACATTGCGATGGTTGGCAAGGGTATTGTGTACGACTGCGGCGGT CTTGCGCTGAAGCCCGCGGCGCACATGACGAACATGAAGACGGATATGGGCGGCTCGGCT GGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAGATGCAGAGGACCCACTTC AGCCACATCGCCAACATCAGCGTGACGCTGTGCTTGGCGGAGAACGCGATCGGCCCCCAC TCGTACCGCAACGACGACGTTGTGGTGATGAAGTCGGGCAAGTCGGTGGAGGTGATGAAC ACGGATGCGGAGGGCCGCATCGTGCTGGGCGACGGCGTGTACTACGCGACGGGCGAGCAG GACTTCGTCCCGGATGTGCTGATCGACATGGCGACGCTGACGGGTGCGCAAGGTGTGGCG ACGGGCTCGAAGCACGCCGGCGTTTACGCCAGCGATGCCGAGGCGGAGAAGGACATGATC AGTGCGGGCCTGCAGTCCGGCGACCTGTGCTACCCAGTGCTGTACTGCCCCGAGTACCAC GAGGAGGTGTACAAGAGCCCTTGCGCTGACATGCGCAACATTGCAAACTCGTCATCCAGC GCCGGCTCGAGCTGCGGCGGGTACTTTGTCGAGCAGCACCTGAGCGAGCGCTTCAGGGGC CCCTTCGTGCACGTTGATATGGCCTACCCCACCTCGAACACGGCTGGCGCCACCGGCTAC GGTGTTACTCTCGTGTTCGAGTTTCTGCGCCAGCACTAG
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  • Fasta :-

    MTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPH SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYYATGEQDFVPDVLIDMATLTGAQGVA TGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSSSS AGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH

  • title: Substrate-binding/catalytic site
  • coordinates: K52,D57,K64,D75,D142,E144,R146,L173
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.11.062092 SAVVRSMKMQ0.994unspLmjF.11.0620121 SIGPHSYRND0.996unsp

LmjF.11.0620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India