LmjF.12.0030 | proteasome beta-1 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.12.0030OTHER0.9993500.0004970.000153
No Results

  • Fasta :-

    >LmjF.12.0030 MLQRPDHTLLQEPSYPKDIEQKLTENGPAQAGKQLFQPEPAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEAED LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/549 Sequence name : 549 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 2.823 CoefTot : -0.151 ChDiff : 0 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.382 0.138 0.555 MesoH : 0.096 0.460 -0.155 0.326 MuHd_075 : 23.746 14.366 8.183 4.725 MuHd_095 : 17.559 14.785 5.106 4.583 MuHd_100 : 22.309 15.329 6.681 5.702 MuHd_105 : 18.759 12.988 6.323 5.755 Hmax_075 : 10.150 6.767 0.497 3.547 Hmax_095 : -5.775 2.362 -3.671 1.558 Hmax_100 : 1.600 2.100 -2.045 2.460 Hmax_105 : 1.100 2.400 -1.980 2.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9722 0.0278 DFMC : 0.9686 0.0314
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 LmjF.12.0030 MLQRPDHTLLQEPSYPKDIEQKLTENGPAQAGKQLFQPEPAVIDPQLSEAVSLGTTILAVSYKGGVVLAADSRTSSGTYV 80 VNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPI 160 NGGSVYSIPSGGSCVKLDYALGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEAED 240 LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.12.0030 4 ---MLQR|PD 0.087 . LmjF.12.0030 17 QEPSYPK|DI 0.083 . LmjF.12.0030 22 PKDIEQK|LT 0.074 . LmjF.12.0030 33 GPAQAGK|QL 0.100 . LmjF.12.0030 63 ILAVSYK|GG 0.067 . LmjF.12.0030 73 VLAADSR|TS 0.077 . LmjF.12.0030 83 GTYVVNR|AS 0.100 . LmjF.12.0030 87 VNRASNK|LT 0.065 . LmjF.12.0030 90 ASNKLTK|LT 0.080 . LmjF.12.0030 94 LTKLTEK|IY 0.056 . LmjF.12.0030 99 EKIYCCR|SG 0.137 . LmjF.12.0030 112 TQALAER|VS 0.081 . LmjF.12.0030 139 AANLFHK|MC 0.072 . LmjF.12.0030 145 KMCYVNR|WN 0.099 . LmjF.12.0030 176 SGGSCVK|LD 0.064 . LmjF.12.0030 198 FFDANYK|PG 0.054 . LmjF.12.0030 203 YKPGMSK|SE 0.079 . LmjF.12.0030 212 CVAFCQR|AV 0.102 . LmjF.12.0030 220 VAHAYSR|DG 0.116 . LmjF.12.0030 229 SSGGLIR|TI 0.082 . LmjF.12.0030 246 DLTVPWK|RS 0.055 . LmjF.12.0030 247 LTVPWKR|SP 0.319 . LmjF.12.0030 254 SPYCMEK|DP 0.071 . LmjF.12.0030 257 CMEKDPK|YQ 0.067 . LmjF.12.0030 273 PFSSSAK|VT 0.082 . LmjF.12.0030 278 AKVTGNR|MS 0.108 . ____________________________^_________________

  • Fasta :-

    >LmjF.12.0030 ATGCTCCAGCGTCCTGATCATACTCTTCTGCAGGAACCTTCGTATCCGAAGGATATCGAG CAGAAGCTGACGGAGAATGGGCCAGCACAGGCGGGCAAGCAGCTGTTCCAGCCGGAACCC GCCGTTATTGATCCGCAGCTGAGTGAGGCAGTCTCTCTGGGCACAACGATTCTTGCTGTA TCGTACAAAGGCGGTGTTGTTCTTGCCGCTGACTCGCGCACTTCGTCTGGCACGTATGTG GTGAATCGTGCCAGCAACAAGCTGACGAAGCTGACGGAGAAGATTTACTGCTGTCGAAGT GGTTCTGCCGCGGATACACAGGCTCTCGCTGAGCGCGTCTCGAACTACCTCGGTAGCTAT CAAACGGATATCGGCGCAGACGTGAACGTTGCCACAGCCGCGAATCTGTTTCACAAGATG TGCTATGTGAACAGATGGAACATCTCGGCGGGCATTATCGTCGCCGGGTACGACCCGATC AACGGAGGCTCGGTGTACAGCATCCCATCTGGTGGATCATGTGTGAAGCTCGACTATGCA CTTGGGGGCAGCGGCTCCATATTCTTGTACTCATTCTTTGACGCCAACTATAAACCGGGT ATGTCGAAGAGCGAGTGCGTTGCCTTCTGCCAGCGCGCTGTCGCGCACGCGTACAGCCGC GACGGCTCCAGCGGCGGTCTGATCCGTACGATCACCCTCGACGCTGACGAGGCAGAGGAC CTGACGGTCCCATGGAAACGGTCGCCCTACTGCATGGAGAAGGATCCCAAATATCAGGTG CAGGCCGTGCAGAACCCGCCCTTCAGCAGCAGCGCCAAGGTTACTGGAAATCGGATGTCT TCGACAGGGTGA
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  • Fasta :-

    MLQRPDHTLLQEPSYPKDIEQKLTENGPAQAGKQLFQPEPAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEAED LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG

  • title: active site
  • coordinates: T55,D71,R73,K87,S184,D221,S224,G225
No Results
No Results
IDSitePeptideScoreMethod
LmjF.12.003061 SILAVSYKGG0.996unsp

LmjF.12.0030      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India