LmjF.12.0210 | proteasome regulatory ATPase subunittcc1l8.3, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.12.0210OTHER0.9988020.0003270.000870
No Results

  • Fasta :-

    >LmjF.12.0210 MAASSVASVSATKASALAAKKAEKDAHDSRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/232 Sequence name : 232 Sequence length : 411 VALUES OF COMPUTED PARAMETERS Coef20 : 5.001 CoefTot : 1.612 ChDiff : 2 ZoneTo : 22 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.382 0.015 0.475 MesoH : -0.539 0.324 -0.369 0.176 MuHd_075 : 12.341 8.348 3.213 2.902 MuHd_095 : 20.848 11.878 6.500 3.987 MuHd_100 : 18.852 8.161 5.529 2.705 MuHd_105 : 16.929 5.752 4.763 1.873 Hmax_075 : 14.350 14.500 2.329 4.630 Hmax_095 : 10.325 14.400 1.591 4.500 Hmax_100 : 9.200 14.400 1.097 4.500 Hmax_105 : 8.225 11.900 0.550 2.427 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7333 0.2667 DFMC : 0.5286 0.4714
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 411 LmjF.12.0210 MAASSVASVSATKASALAAKKAEKDAHDSRSLFEEYEQLSKDIKNIQLKTMICRTETHQLMKEESAAKQEVKRIQAVPLV 80 LGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNVSVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVG 160 GLDMQKQEIREAVELPLTHAGLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR 240 DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVIMATNRWDTLDPALLRPGRLD 320 RKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPEKLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIK 400 KTGDETYDFYS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............P.................................................................. 400 ........... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.12.0210 13 ASVSATK|AS 0.058 . LmjF.12.0210 20 ASALAAK|KA 0.088 . LmjF.12.0210 21 SALAAKK|AE 0.089 . LmjF.12.0210 24 AAKKAEK|DA 0.105 . LmjF.12.0210 30 KDAHDSR|SL 0.167 . LmjF.12.0210 41 EYEQLSK|DI 0.062 . LmjF.12.0210 44 QLSKDIK|NI 0.069 . LmjF.12.0210 49 IKNIQLK|TM 0.066 . LmjF.12.0210 54 LKTMICR|TE 0.090 . LmjF.12.0210 62 ETHQLMK|EE 0.070 . LmjF.12.0210 68 KEESAAK|QE 0.058 . LmjF.12.0210 72 AAKQEVK|RI 0.070 . LmjF.12.0210 73 AKQEVKR|IQ 0.148 . LmjF.12.0210 92 EVVDSVR|GI 0.087 . LmjF.12.0210 106 GSQYFVR|IL 0.129 . LmjF.12.0210 113 ILSTLNK|EH 0.060 . LmjF.12.0210 117 LNKEHLK|PN 0.067 . LmjF.12.0210 126 VSVGLHK|SS 0.081 . LmjF.12.0210 151 LLNSSDR|PD 0.088 . LmjF.12.0210 166 GGLDMQK|QE 0.056 . LmjF.12.0210 170 MQKQEIR|EA 0.097 . LmjF.12.0210 192 IGIDPPR|GV 0.129 . LmjF.12.0210 204 GPPGTGK|TM 0.057 . LmjF.12.0210 209 GKTMLVK|AV 0.077 . LmjF.12.0210 213 LVKAVAR|HT 0.122 . LmjF.12.0210 216 AVARHTK|AS 0.150 . LmjF.12.0210 221 TKASFIR|VV 0.223 . LmjF.12.0210 230 GSEFVQK|FL 0.106 . LmjF.12.0210 237 FLGEGPR|KV 0.133 . LmjF.12.0210 238 LGEGPRK|VR 0.069 . LmjF.12.0210 240 EGPRKVR|DV 0.382 . LmjF.12.0210 244 KVRDVFR|LA 0.127 . LmjF.12.0210 247 DVFRLAR|EN 0.193 . LmjF.12.0210 265 VDSIATK|RF 0.069 . LmjF.12.0210 266 DSIATKR|FD 0.204 . LmjF.12.0210 275 AQTGADR|EV 0.099 . LmjF.12.0210 279 ADREVQR|VL 0.106 . LmjF.12.0210 298 DQTTNVK|VI 0.058 . LmjF.12.0210 305 VIMATNR|WD 0.076 . LmjF.12.0210 315 LDPALLR|PG 0.068 . LmjF.12.0210 318 ALLRPGR|LD 0.212 . LmjF.12.0210 321 RPGRLDR|KI 0.275 . LmjF.12.0210 322 PGRLDRK|IE 0.070 . LmjF.12.0210 330 EFPYPDR|RQ 0.065 . LmjF.12.0210 331 FPYPDRR|QK 0.119 . LmjF.12.0210 333 YPDRRQK|RL 0.118 . LmjF.12.0210 334 PDRRQKR|LV 0.807 *ProP* LmjF.12.0210 343 FQVCTSK|MN 0.057 . LmjF.12.0210 358 LEDYVTR|PE 0.081 . LmjF.12.0210 361 YVTRPEK|LS 0.126 . LmjF.12.0210 380 AGMLAVR|KN 0.073 . LmjF.12.0210 381 GMLAVRK|NR 0.081 . LmjF.12.0210 383 LAVRKNR|YV 0.387 . LmjF.12.0210 389 RYVILPR|DI 0.145 . LmjF.12.0210 396 DIENAYR|TV 0.119 . LmjF.12.0210 400 AYRTVIK|KT 0.089 . LmjF.12.0210 401 YRTVIKK|TG 0.097 . ____________________________^_________________

  • Fasta :-

    >LmjF.12.0210 ATGGCCGCCTCCAGCGTTGCATCCGTGTCGGCCACGAAGGCCTCTGCTCTTGCCGCCAAG AAGGCGGAGAAGGACGCGCATGACAGTCGCTCTCTCTTCGAGGAGTACGAGCAGCTCAGC AAAGACATCAAGAACATACAGCTCAAGACGATGATCTGCAGGACCGAGACGCACCAGCTC ATGAAGGAAGAGAGCGCGGCGAAGCAGGAGGTGAAGCGCATCCAGGCGGTGCCCCTCGTC CTCGGCAACTTCGTCGAGGTTGTGGACAGCGTACGCGGTATCGTGAGCGGCACGAGCGGC TCACAGTACTTTGTGCGCATCCTTTCTACCCTCAACAAGGAGCATCTCAAGCCGAACGTC AGCGTCGGCCTGCACAAAAGCAGCAACGCCTGCGTGCAGCTGCTGCCGAGTGAAACGGAC GCGACCATCACGCTGCTCAACTCGAGCGACAGACCCGACGTCACGTACTCGGACGTGGGT GGTCTGGACATGCAGAAGCAGGAGATTCGCGAGGCCGTGGAGCTGCCACTGACACACGCG GGCCTGTACGAGCAGATTGGCATTGACCCTCCGCGTGGTGTGCTGCTCTACGGCCCGCCC GGCACCGGCAAGACAATGCTGGTGAAGGCCGTGGCGCGGCACACGAAGGCCTCCTTCATC CGCGTTGTCGGCAGCGAGTTTGTGCAGAAGTTCCTCGGCGAGGGCCCGCGCAAAGTACGC GACGTGTTTCGTCTCGCCCGCGAGAACGCGCCATCGATCATCTTCATCGACGAGGTCGAC TCCATCGCGACCAAACGTTTTGATGCTCAGACCGGCGCCGATCGTGAGGTGCAGCGTGTG CTTGTGGAGCTGCTTACCCAGATGGACGGCTTTGACCAGACAACCAACGTCAAGGTCATC ATGGCCACAAACCGCTGGGACACGCTGGACCCCGCGCTGCTGCGCCCTGGCCGCCTCGAC CGAAAGATCGAGTTCCCGTACCCTGACCGCCGCCAGAAGCGCCTCGTCTTCCAGGTATGC ACGTCGAAGATGAACCTGTCGCCTGAAGTGGACCTCGAAGACTACGTGACTCGGCCGGAG AAGCTCAGCGGCGCCGACATCCAGTCCATCTGCCAGGAAGCGGGTATGCTGGCGGTGCGG AAGAATCGATACGTTATTCTGCCGCGCGACATCGAAAATGCGTACCGGACGGTGATCAAG AAGACTGGGGATGAGACGTACGACTTCTACTCGTGA
  • Download Fasta

  • Fasta :-

    MAASSVASVSATKASALAAKKAEKDAHDSRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS

  • title: ATP binding site
  • coordinates: P199,P200,G201,T202,G203,K204,T205,M206,D257,N304
No Results
No Results
No Results

LmjF.12.0210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India