LmjF.13.1140 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.13.1140OTHER0.9814280.0002650.018307
No Results

  • Fasta :-

    >LmjF.13.1140 MQRGANVRPIKLAEKVFSTKTVCPTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKL RRAIAVDMRNHGSSTHSSDHTNAALASDLEALVLREQQELDRAFCDPSSCTTRNAILIGH SMGGLTVMGALLRRANEHHLLTSLVDHCDDVGSTSSYGAWPAEHRRQCIAGMRAVNEEFG FASSQPIAEVLFNNCRASSSLSTGSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSCADN VKETLERMTQVRLDEIHSYKDATAELIRVGMADEEMRAFVATNIALDPKDKSKPAQWKCN LPVLAGDYGSFQPSITSWFTSSATTMGPASSAAAPRLCTLPVMFVFGGESPYNEPDHRQH ISRFFSNATQVEVAGAGHFVHYEKPKEFTDAVAPFIASLISQP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/539 Sequence name : 539 Sequence length : 403 VALUES OF COMPUTED PARAMETERS Coef20 : 4.095 CoefTot : -0.975 ChDiff : -2 ZoneTo : 51 KR : 6 DE : 1 CleavSite : 58 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.835 1.629 0.232 0.676 MesoH : -0.024 0.231 -0.273 0.206 MuHd_075 : 36.142 29.621 11.609 8.581 MuHd_095 : 35.023 16.238 8.271 7.126 MuHd_100 : 24.013 17.859 5.927 5.453 MuHd_105 : 26.844 20.078 8.969 6.389 Hmax_075 : 16.917 18.783 3.389 5.915 Hmax_095 : 9.975 9.800 0.154 3.981 Hmax_100 : 7.700 15.700 1.121 3.060 Hmax_105 : 12.833 18.433 3.893 4.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0988 0.9012 DFMC : 0.1222 0.8778 This protein is probably imported in mitochondria. f(Ser) = 0.0784 f(Arg) = 0.0588 CMi = 0.51480 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 403 LmjF.13.1140 MQRGANVRPIKLAEKVFSTKTVCPTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKLRRAIAVDMRNHGSSTHSSDH 80 TNAALASDLEALVLREQQELDRAFCDPSSCTTRNAILIGHSMGGLTVMGALLRRANEHHLLTSLVDHCDDVGSTSSYGAW 160 PAEHRRQCIAGMRAVNEEFGFASSQPIAEVLFNNCRASSSLSTGSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSCADN 240 VKETLERMTQVRLDEIHSYKDATAELIRVGMADEEMRAFVATNIALDPKDKSKPAQWKCNLPVLAGDYGSFQPSITSWFT 320 SSATTMGPASSAAAPRLCTLPVMFVFGGESPYNEPDHRQHISRFFSNATQVEVAGAGHFVHYEKPKEFTDAVAPFIASLI 400 SQP 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.13.1140 3 ----MQR|GA 0.092 . LmjF.13.1140 8 QRGANVR|PI 0.118 . LmjF.13.1140 11 ANVRPIK|LA 0.244 . LmjF.13.1140 15 PIKLAEK|VF 0.060 . LmjF.13.1140 20 EKVFSTK|TV 0.076 . LmjF.13.1140 48 NWATASR|HL 0.080 . LmjF.13.1140 57 VEHSALK|DK 0.058 . LmjF.13.1140 59 HSALKDK|LR 0.067 . LmjF.13.1140 61 ALKDKLR|RA 0.115 . LmjF.13.1140 62 LKDKLRR|AI 0.135 . LmjF.13.1140 69 AIAVDMR|NH 0.108 . LmjF.13.1140 95 LEALVLR|EQ 0.080 . LmjF.13.1140 102 EQQELDR|AF 0.074 . LmjF.13.1140 113 PSSCTTR|NA 0.158 . LmjF.13.1140 133 VMGALLR|RA 0.074 . LmjF.13.1140 134 MGALLRR|AN 0.177 . LmjF.13.1140 165 AWPAEHR|RQ 0.078 . LmjF.13.1140 166 WPAEHRR|QC 0.240 . LmjF.13.1140 173 QCIAGMR|AV 0.112 . LmjF.13.1140 196 VLFNNCR|AS 0.077 . LmjF.13.1140 210 GSGNASR|IP 0.081 . LmjF.13.1140 216 RIPLLGR|VA 0.124 . LmjF.13.1140 230 DVTPTMR|LG 0.066 . LmjF.13.1140 235 MRLGEQR|SC 0.155 . LmjF.13.1140 242 SCADNVK|ET 0.064 . LmjF.13.1140 247 VKETLER|MT 0.092 . LmjF.13.1140 252 ERMTQVR|LD 0.089 . LmjF.13.1140 260 DEIHSYK|DA 0.098 . LmjF.13.1140 268 ATAELIR|VG 0.081 . LmjF.13.1140 277 MADEEMR|AF 0.082 . LmjF.13.1140 289 NIALDPK|DK 0.073 . LmjF.13.1140 291 ALDPKDK|SK 0.077 . LmjF.13.1140 293 DPKDKSK|PA 0.079 . LmjF.13.1140 298 SKPAQWK|CN 0.075 . LmjF.13.1140 336 SSAAAPR|LC 0.086 . LmjF.13.1140 358 YNEPDHR|QH 0.079 . LmjF.13.1140 363 HRQHISR|FF 0.191 . LmjF.13.1140 384 HFVHYEK|PK 0.060 . LmjF.13.1140 386 VHYEKPK|EF 0.078 . ____________________________^_________________

  • Fasta :-

    >LmjF.13.1140 ATGCAACGGGGGGCCAACGTGCGTCCGATTAAACTGGCGGAGAAGGTGTTCAGCACCAAG ACGGTGTGCCCAACGGCGGCGAGTCAGCTGTACGTAGCCCACGGTCTCCTCGGCAATTCG GGCAACTGGGCAACCGCCTCGCGCCACCTTGTCGAGCACTCTGCTCTCAAAGACAAGCTC CGTCGCGCGATCGCGGTGGACATGCGCAACCACGGCAGCAGTACGCACAGCAGTGACCAC ACGAACGCGGCACTTGCCTCCGATCTCGAAGCGCTGGTGCTGCGCGAACAGCAGGAGCTG GACCGCGCGTTTTGTGACCCATCCTCGTGCACGACACGGAACGCGATCTTGATTGGGCAC AGCATGGGTGGCTTGACGGTGATGGGCGCGCTGTTGCGACGCGCCAACGAGCATCATCTG CTGACCTCGTTGGTTGATCACTGCGACGACGTGGGCTCGACGTCGTCATACGGAGCGTGG CCGGCGGAGCACCGTCGTCAGTGCATCGCTGGAATGCGTGCCGTGAACGAGGAGTTCGGC TTCGCTTCCTCGCAGCCCATCGCGGAAGTGCTCTTCAATAACTGTCGTGCGTCCTCCTCA CTATCAACGGGCAGCGGTAATGCTTCCCGTATCCCGCTGCTGGGTCGCGTCGCTGGTGCG ATCATTGTGGACGTGACACCAACAATGCGGCTGGGTGAACAGCGCAGCTGCGCTGACAAC GTCAAGGAGACGCTCGAGCGCATGACGCAGGTGCGGCTGGACGAAATTCACAGCTACAAG GACGCAACGGCAGAGCTGATCCGGGTCGGCATGGCTGACGAGGAAATGCGTGCTTTCGTG GCAACGAACATCGCGCTTGATCCCAAGGACAAGTCGAAGCCGGCGCAGTGGAAATGCAAT CTGCCGGTCCTCGCCGGCGACTACGGCAGCTTCCAGCCATCCATCACTAGCTGGTTTACG TCGTCGGCAACGACGATGGGGCCGGCGTCCTCGGCTGCCGCGCCGCGGCTGTGCACACTT CCTGTCATGTTCGTCTTTGGTGGTGAGTCGCCTTACAACGAGCCGGATCACCGCCAGCAC ATTTCGCGCTTCTTCTCCAACGCAACGCAGGTGGAGGTGGCCGGCGCCGGTCACTTTGTG CATTACGAGAAGCCGAAGGAGTTCACCGACGCCGTGGCGCCGTTCATCGCCTCCCTCATC TCACAGCCATGA
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  • Fasta :-

    MQRGANVRPIKLAEKVFSTKTVCPTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKL RRAIAVDMRNHGSSTHSSDHTNAALASDLEALVLREQQELDRAFCDPSSCTTRNAILIGH SMGGLTVMGALLRRANEHHLLTSLVDHCDDVGSTSSYGAWPAEHRRQCIAGMRAVNEEFG FASSQPIAEVLFNNCRASSSLSTGSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSCADN VKETLERMTQVRLDEIHSYKDATAELIRVGMADEEMRAFVATNIALDPKDKSKPAQWKCN LPVLAGDYGSFQPSITSWFTSSATTMGPASSAAAPRLCTLPVMFVFGGESPYNEPDHRQH ISRFFSNATQVEVAGAGHFVHYEKPKEFTDAVAPFIASLISQP

    No Results
    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.13.114074 SNHGSSTHSS0.993unspLmjF.13.1140258 SDEIHSYKDA0.997unsp

LmjF.13.1140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India