LmjF.15.0090 | ATP-dependent protease ATPase subunit HslU1, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.15.0090mTP0.0989760.0007180.900305CS pos: 31-32. RCC-ST. Pr: 0.4681
No Results

  • Fasta :-

    >LmjF.15.0090 MHRALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMR PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL KAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPSMM GGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIVTA AGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLAEL QGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIAAY INSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVDKMVKKVDIKKFI L
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/646 Sequence name : 646 Sequence length : 481 VALUES OF COMPUTED PARAMETERS Coef20 : 4.970 CoefTot : 1.796 ChDiff : 0 ZoneTo : 57 KR : 5 DE : 0 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.294 1.312 0.278 0.470 MesoH : -0.647 0.252 -0.305 0.193 MuHd_075 : 21.968 16.946 6.130 6.071 MuHd_095 : 31.908 19.204 8.984 6.880 MuHd_100 : 28.745 17.061 7.936 5.790 MuHd_105 : 27.672 17.829 7.957 5.592 Hmax_075 : 10.900 16.900 1.742 4.940 Hmax_095 : 12.862 12.075 2.370 4.454 Hmax_100 : 12.200 17.100 1.774 3.990 Hmax_105 : 12.600 13.800 5.196 4.069 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0479 0.9521 DFMC : 0.0203 0.9797 This protein is probably imported in mitochondria. f(Ser) = 0.1404 f(Arg) = 0.0702 CMi = 0.83420 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 481 LmjF.15.0090 MHRALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMRPRELMKELDRYIVGQSEAKK 80 AVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYK 160 ASLSQTKQNIRRQHEEEAKLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPSMM 240 GGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLP 320 LVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATE 400 GVDLIFEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVDKMVKKVDIKKFI 480 L 560 ................................................................................ 80 ...........P.................................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 . 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.15.0090 3 ----MHR|AL 0.098 . LmjF.15.0090 10 ALSLSCR|SS 0.201 . LmjF.15.0090 29 TLLTGVR|CC 0.084 . LmjF.15.0090 53 LTNPGSK|TL 0.062 . LmjF.15.0090 57 GSKTLIR|DM 0.135 . LmjF.15.0090 60 TLIRDMR|PR 0.186 . LmjF.15.0090 62 IRDMRPR|EL 0.143 . LmjF.15.0090 66 RPRELMK|EL 0.081 . LmjF.15.0090 70 LMKELDR|YI 0.085 . LmjF.15.0090 79 VGQSEAK|KA 0.064 . LmjF.15.0090 80 GQSEAKK|AV 0.257 . LmjF.15.0090 87 AVSVALR|NR 0.077 . LmjF.15.0090 89 SVALRNR|WR 0.101 . LmjF.15.0090 91 ALRNRWR|RH 0.071 . LmjF.15.0090 92 LRNRWRR|HQ 0.595 *ProP* LmjF.15.0090 100 QVPSDIR|EE 0.064 . LmjF.15.0090 106 REEIAPK|NI 0.070 . LmjF.15.0090 118 GPTGVGK|TE 0.060 . LmjF.15.0090 123 GKTEIAR|RL 0.082 . LmjF.15.0090 124 KTEIARR|LA 0.120 . LmjF.15.0090 127 IARRLAK|LV 0.241 . LmjF.15.0090 135 VDAPFVK|VE 0.061 . LmjF.15.0090 140 VKVEATK|FT 0.093 . LmjF.15.0090 149 EVGFHGR|DV 0.215 . LmjF.15.0090 160 IIEDLYK|AS 0.064 . LmjF.15.0090 167 ASLSQTK|QN 0.067 . LmjF.15.0090 171 QTKQNIR|RQ 0.079 . LmjF.15.0090 172 TKQNIRR|QH 0.174 . LmjF.15.0090 179 QHEEEAK|LK 0.058 . LmjF.15.0090 181 EEEAKLK|AE 0.075 . LmjF.15.0090 185 KLKAEDR|IL 0.083 . LmjF.15.0090 188 AEDRILK|SL 0.167 . LmjF.15.0090 198 GVSDGFR|EH 0.076 . LmjF.15.0090 202 GFREHLR|SG 0.092 . LmjF.15.0090 218 MVELQEK|KE 0.058 . LmjF.15.0090 219 VELQEKK|EK 0.073 . LmjF.15.0090 221 LQEKKEK|PK 0.078 . LmjF.15.0090 223 EKKEKPK|TA 0.092 . LmjF.15.0090 244 SMMGGQR|QQ 0.089 . LmjF.15.0090 249 QRQQTVK|KV 0.107 . LmjF.15.0090 250 RQQTVKK|VM 0.092 . LmjF.15.0090 253 TVKKVMK|IK 0.073 . LmjF.15.0090 255 KKVMKIK|DA 0.120 . LmjF.15.0090 268 LQEELDK|MM 0.069 . LmjF.15.0090 281 VTAEALR|AC 0.087 . LmjF.15.0090 296 VIDEIDK|IV 0.070 . LmjF.15.0090 305 TAAGGYK|GH 0.070 . LmjF.15.0090 330 GTTVSTK|FN 0.070 . LmjF.15.0090 336 KFNVQVK|TD 0.064 . LmjF.15.0090 339 VQVKTDK|IL 0.065 . LmjF.15.0090 352 GAFHSVK|PS 0.065 . LmjF.15.0090 363 LAELQGR|LP 0.086 . LmjF.15.0090 367 QGRLPIR|VE 0.089 . LmjF.15.0090 375 ELQQLSK|ED 0.060 . LmjF.15.0090 380 SKEDFHR|II 0.112 . LmjF.15.0090 386 RIITEPR|FN 0.101 . LmjF.15.0090 394 NLIAQHK|AM 0.072 . LmjF.15.0090 431 VQNIGAR|RL 0.093 . LmjF.15.0090 432 QNIGARR|LI 0.139 . LmjF.15.0090 439 LITITEK|VV 0.068 . LmjF.15.0090 451 SFEGPER|KS 0.088 . LmjF.15.0090 452 FEGPERK|SE 0.110 . LmjF.15.0090 455 PERKSEK|FV 0.110 . LmjF.15.0090 464 IDAAYVK|KA 0.064 . LmjF.15.0090 465 DAAYVKK|AV 0.211 . LmjF.15.0090 469 VKKAVDK|MV 0.088 . LmjF.15.0090 472 AVDKMVK|KV 0.073 . LmjF.15.0090 473 VDKMVKK|VD 0.091 . LmjF.15.0090 477 VKKVDIK|KF 0.060 . LmjF.15.0090 478 KKVDIKK|FI 0.108 . ____________________________^_________________

  • Fasta :-

    >LmjF.15.0090 ATGCACCGCGCCCTCTCGCTGTCCTGCCGCTCCAGCGTCGCTGCCACTGGTGCTGCGTCC TCGCACACGCTGCTCACGGGCGTACGATGCTGCAGCACGGCCGCTGCCGCTGCTGCTGCG CCTGCACCAGCCGCACCCCTCACGAACCCCGGCTCCAAGACACTCATTCGGGACATGCGT CCACGCGAGCTGATGAAGGAGCTAGACCGCTACATTGTGGGTCAGAGCGAGGCGAAGAAA GCTGTGTCGGTGGCGCTGCGCAATCGCTGGCGCCGCCACCAGGTGCCGAGCGACATTCGC GAGGAAATCGCGCCAAAGAATATTCTGATGATTGGCCCGACCGGCGTGGGCAAGACGGAG ATTGCCCGCCGCCTCGCCAAGCTCGTAGATGCTCCGTTCGTCAAGGTGGAGGCGACCAAG TTCACGGAGGTCGGTTTCCACGGCCGCGACGTGGAGAGCATCATCGAGGACCTCTATAAG GCCTCTTTGTCGCAGACCAAGCAGAACATCCGTCGCCAGCATGAGGAAGAGGCGAAGTTG AAGGCGGAGGACCGCATTCTTAAGTCTTTGGCCGGCGTGTCAGACGGCTTCCGCGAGCAC CTGCGCAGCGGGGCATTGGACGACATTGAGGTCATGGTAGAGCTTCAAGAGAAGAAAGAG AAACCCAAGACAGCGAGCGGCGAGGGCGTCTTCATTTCTCTCGACATCCCTTCCATGATG GGCGGGCAGCGCCAGCAGACGGTGAAGAAGGTGATGAAGATCAAGGACGCCTTCCCGGCT GTGCTGCAGGAGGAGCTGGACAAGATGATGGACACCGAGGACGTCACGGCTGAGGCGCTG CGCGCCTGCGAGGAGGACGGCATCGTTGTCATTGACGAGATCGACAAGATCGTGACGGCG GCGGGCGGGTACAAGGGTCACCAGGCTTCCGCCGAGGGCGTCCAGCAGGATCTGCTACCT TTGGTAGAGGGCACCACGGTGTCGACGAAGTTTAATGTGCAGGTGAAGACGGACAAGATC TTGTTTATCTGCAGCGGCGCCTTCCACAGCGTTAAGCCGTCCGACATGCTGGCGGAGCTG CAGGGTCGTCTGCCCATCCGCGTCGAGCTCCAGCAGCTGAGCAAGGAGGACTTTCACCGC ATCATCACCGAGCCTCGTTTCAACCTTATTGCGCAACACAAGGCGATGATGGCTACAGAG GGTGTCGACCTTATCTTTGAGGACGACGCACTCTGGGAGATTGCTAGCATCGCCGCGTAT ATCAACTCGACAGTGCAGAACATCGGTGCCCGCCGCCTCATCACAATCACGGAGAAGGTT GTTGAGGAGATCAGCTTCGAGGGGCCGGAGCGGAAGAGCGAGAAGTTCGTCATTGACGCC GCTTACGTCAAGAAGGCCGTGGACAAGATGGTCAAGAAAGTGGACATCAAGAAGTTCATC TTGTGA
  • Download Fasta

  • Fasta :-

    MHRALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMR PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL KAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPSMM GGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIVTA AGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLAEL QGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIAAY INSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVDKMVKKVDIKKFI L

  • title: ATP binding site
  • coordinates: P113,T114,G115,V116,G117,K118,T119,E120
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.15.0090374 SLQQLSKEDF0.994unspLmjF.15.0090453 SPERKSEKFV0.995unsp

LmjF.15.0090      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India