LmjF.15.1530 | presenilin-like aspartic peptidase, clan AD, family A22A, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.15.1530OTHER0.9998330.0000090.000157
No Results

  • Fasta :-

    >LmjF.15.1530 MSSMPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNSQAPPLPVVVNEN DAGTAGEKFVYSLVAALIVVGCVVVATFATVVLYHFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWALLMCIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT ASSARVPATAAESFTSTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/14 Sequence name : 14 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 4.346 CoefTot : 0.215 ChDiff : -1 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.529 2.865 0.590 0.861 MesoH : 1.645 1.720 0.177 0.692 MuHd_075 : 18.426 13.300 4.743 3.677 MuHd_095 : 8.224 1.660 0.879 2.334 MuHd_100 : 11.205 0.971 2.415 2.537 MuHd_105 : 16.260 5.390 4.182 3.134 Hmax_075 : 3.237 10.325 0.016 2.820 Hmax_095 : 3.800 6.475 -0.300 3.180 Hmax_100 : 3.800 8.200 -0.224 3.180 Hmax_105 : 10.967 9.100 1.789 3.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9160 0.0840 DFMC : 0.9069 0.0931
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 LmjF.15.1530 MSSMPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNSQAPPLPVVVNENDAGTAGEKFVYSLVAALIVV 80 GCVVVATFATVVLYHFHLQFVLYGWLAFSAVSMFFMLLWIWLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPT 160 VTQVYLVIASILTAWSLTALPEWSTWALLMCIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT 240 ASSARVPATAAESFTSTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGMLGTLLSLLLFRNSLRALPAL 320 PCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.15.1530 11 PLLDDAR|LS 0.077 . LmjF.15.1530 14 DDARLSR|GV 0.458 . LmjF.15.1530 19 SRGVGIR|FV 0.233 . LmjF.15.1530 68 AGTAGEK|FV 0.068 . LmjF.15.1530 209 QQGPLHR|LI 0.089 . LmjF.15.1530 212 PLHRLIK|IA 0.129 . LmjF.15.1530 217 IKIAQER|DE 0.093 . LmjF.15.1530 245 ATASSAR|VP 0.095 . LmjF.15.1530 265 QHATPFK|LG 0.056 . LmjF.15.1530 280 YSLLVGR|AS 0.098 . LmjF.15.1530 311 LSLLLFR|NS 0.082 . LmjF.15.1530 315 LFRNSLR|AL 0.089 . LmjF.15.1530 335 VVFVLCR|LI 0.084 . ____________________________^_________________

  • Fasta :-

    >LmjF.15.1530 ATGTCGAGCATGCCTCTCTTAGACGACGCACGCCTCTCACGTGGTGTGGGTATCCGGTTT GTGTCGCTTGTCGTGCCTGTGACTGTCACCATGTTGGCCGTGGTGTGGAGCCTTTCCTGC CTCTCGCCTATCTACGTGAACAGCCAGGCGCCGCCTCTGCCGGTGGTGGTAAACGAGAAT GACGCGGGTACTGCGGGCGAGAAGTTTGTGTACTCACTGGTGGCGGCTCTGATCGTCGTT GGGTGCGTCGTGGTCGCAACGTTTGCAACTGTGGTGCTCTATCACTTCCATCTCCAGTTT GTATTGTATGGCTGGCTGGCGTTTTCGGCAGTGTCGATGTTTTTTATGTTGCTGTGGATT TGGCTGGACTTGTTCTGCACATATTTCCAAATCCCTTACAACGTCATTTCGATGGGCATC TTTGTGTGGAACTTCGGGGTGGTGGGTCTCATCGCCCTCTTTTACTACTCTCACCCTACT GTGACGCAGGTGTATTTGGTCATCGCCTCCATCTTGACTGCGTGGTCGCTGACGGCGCTG CCGGAATGGTCGACGTGGGCGTTGCTGATGTGCATCGCCACGTACGACATTCTTGCAGTT CTCTGGCAGCAGGGGCCACTACATCGACTAATCAAGATAGCTCAGGAACGCGATGAGCCG ATACCCGGATTCGTCTACAGCAGCGCACACAGCATCGTTCCGATTACGCAGCCTGCAACA GCGAGCTCGGCGCGTGTACCAGCAACGGCAGCTGAGTCCTTCACGTCGACGGTGCAGCAC GCCACTCCATTCAAGCTGGGCCTTGGCGACTTTATCTTTTACAGCCTTCTTGTTGGTCGT GCCTCATTTTCTGGCTTTGTGTCGTGGGGTTTCTGTATGGTGAGCATCCTGGCGGGTATG TTGGGCACGCTGCTGTCCTTGCTACTTTTCCGCAACTCGCTGCGTGCGCTGCCGGCTCTG CCGTGCTCCATTTTTCTTTCTACTGTCGTCTTTGTGCTCTGCAGGCTAATTGTGGAGTCG CTGAGCTCCTTTACGAGTCATCACCTGCTGGTGCTCTAA
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  • Fasta :-

    MSSMPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNSQAPPLPVVVNEN DAGTAGEKFVYSLVAALIVVGCVVVATFATVVLYHFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWALLMCIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT ASSARVPATAAESFTSTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL

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LmjF.15.1530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India