LmjF.16.0290 | proteasome 26S non-ATPase subunit 9, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.16.0290OTHER0.9999860.0000050.000008
No Results

  • Fasta :-

    >LmjF.16.0290 MNGRSIEDIVEIEDYRAPAVDSTIGDMDKEALREELRRLDAQKAALETKLTDALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRALNEKVYSLLNELHRQTQEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGTVTQTELIAEGLQALARETSTHEGAPIVVWVRKPGELQDDPSELVLVPQRWQGPGL LGCALDRVGDEAV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/497 Sequence name : 497 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.490 CoefTot : -0.137 ChDiff : -10 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.700 0.653 -0.092 0.355 MesoH : -0.753 0.187 -0.421 0.175 MuHd_075 : 17.888 10.122 4.698 2.130 MuHd_095 : 24.416 15.861 5.376 5.447 MuHd_100 : 20.922 15.770 5.560 4.341 MuHd_105 : 21.684 15.562 6.385 3.868 Hmax_075 : 0.933 5.833 -1.143 2.893 Hmax_095 : 1.225 7.962 -1.298 3.027 Hmax_100 : -1.600 7.600 -1.340 3.480 Hmax_105 : -4.500 6.600 -2.101 2.473 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7881 0.2119 DFMC : 0.7607 0.2393
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 LmjF.16.0290 MNGRSIEDIVEIEDYRAPAVDSTIGDMDKEALREELRRLDAQKAALETKLTDALQYLASTPVGLRGRLLDDEGFPRNDCD 80 LYAVRTARNTADSTRNDLRALNEKVYSLLNELHRQTQEEAQLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVV 160 AKVDANSPAEEAGLSVGMQILQYGTVTQTELIAEGLQALARETSTHEGAPIVVWVRKPGELQDDPSELVLVPQRWQGPGL 240 LGCALDRVGDEAV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.16.0290 4 ---MNGR|SI 0.204 . LmjF.16.0290 16 VEIEDYR|AP 0.065 . LmjF.16.0290 29 TIGDMDK|EA 0.067 . LmjF.16.0290 33 MDKEALR|EE 0.070 . LmjF.16.0290 37 ALREELR|RL 0.090 . LmjF.16.0290 38 LREELRR|LD 0.129 . LmjF.16.0290 43 RRLDAQK|AA 0.070 . LmjF.16.0290 49 KAALETK|LT 0.071 . LmjF.16.0290 65 STPVGLR|GR 0.062 . LmjF.16.0290 67 PVGLRGR|LL 0.095 . LmjF.16.0290 76 DDEGFPR|ND 0.082 . LmjF.16.0290 85 CDLYAVR|TA 0.077 . LmjF.16.0290 88 YAVRTAR|NT 0.300 . LmjF.16.0290 95 NTADSTR|ND 0.089 . LmjF.16.0290 99 STRNDLR|AL 0.107 . LmjF.16.0290 104 LRALNEK|VY 0.063 . LmjF.16.0290 114 LLNELHR|QT 0.093 . LmjF.16.0290 131 VQDAAAR|RQ 0.075 . LmjF.16.0290 132 QDAAARR|QR 0.124 . LmjF.16.0290 134 AAARRQR|QA 0.394 . LmjF.16.0290 140 RQAAAEK|RA 0.064 . LmjF.16.0290 141 QAAAEKR|AQ 0.233 . LmjF.16.0290 144 AEKRAQR|MA 0.432 . LmjF.16.0290 150 RMAEVQR|VS 0.081 . LmjF.16.0290 153 EVQRVSR|LK 0.142 . LmjF.16.0290 155 QRVSRLK|PC 0.064 . LmjF.16.0290 162 PCLVVAK|VD 0.059 . LmjF.16.0290 201 GLQALAR|ET 0.148 . LmjF.16.0290 216 PIVVWVR|KP 0.084 . LmjF.16.0290 217 IVVWVRK|PG 0.084 . LmjF.16.0290 234 LVLVPQR|WQ 0.106 . LmjF.16.0290 247 LGCALDR|VG 0.078 . ____________________________^_________________

  • Fasta :-

    >LmjF.16.0290 ATGAACGGGCGCAGCATCGAGGACATTGTCGAGATCGAGGACTACCGCGCCCCCGCGGTT GACTCCACCATAGGCGATATGGATAAGGAAGCCCTTCGTGAAGAGCTGCGTCGCCTGGAC GCACAGAAGGCGGCCCTCGAGACGAAGCTGACGGACGCACTTCAGTATCTCGCATCGACC CCTGTTGGGCTTCGCGGCCGCTTGCTTGACGATGAGGGGTTCCCGCGAAACGACTGCGAC CTGTACGCGGTTCGAACAGCCCGGAACACGGCCGACTCCACACGCAACGACCTGCGCGCG CTGAACGAAAAAGTATACAGCCTTCTCAATGAGCTGCACCGCCAGACGCAAGAGGAGGCG CAGCTACAGATGGTACAGGACGCCGCTGCCCGCCGCCAACGACAGGCAGCGGCGGAGAAG CGGGCGCAGCGCATGGCAGAGGTGCAGCGTGTCTCGCGGCTGAAGCCGTGCCTGGTGGTG GCGAAAGTGGACGCCAATAGCCCGGCGGAGGAGGCCGGCCTCTCCGTCGGCATGCAGATC CTGCAATACGGCACGGTGACGCAGACGGAGCTGATCGCGGAGGGTCTGCAGGCGCTGGCG AGGGAAACATCCACCCACGAAGGGGCGCCGATTGTGGTGTGGGTGCGGAAGCCAGGAGAG CTGCAAGATGATCCGTCCGAGCTTGTACTAGTGCCGCAGCGCTGGCAAGGGCCCGGGCTG CTCGGCTGCGCCTTGGACAGAGTCGGGGACGAAGCTGTGTGA
  • Download Fasta

  • Fasta :-

    MNGRSIEDIVEIEDYRAPAVDSTIGDMDKEALREELRRLDAQKAALETKLTDALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRALNEKVYSLLNELHRQTQEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGTVTQTELIAEGLQALARETSTHEGAPIVVWVRKPGELQDDPSELVLVPQRWQGPGL LGCALDRVGDEAV

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.16.0290204 SARETSTHEG0.992unspLmjF.16.0290204 SARETSTHEG0.992unspLmjF.16.0290204 SARETSTHEG0.992unspLmjF.16.029093 SNTADSTRND0.996unspLmjF.16.0290167 SVDANSPAEE0.994unsp

LmjF.16.0290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India