LmjF.18.0360 | GPI-anchor transamidase subunit 8 (GPI8), putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.18.0360OTHER0.9998750.0000950.000030
No Results

  • Fasta :-

    >LmjF.18.0360 MNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDDKSNIIIYVAGHGAKSY FKFQDTEFLSSSDISETLMMMHQQRRYGRVVFMADTCHAIALCEHVEAPNVVCLAASDAE SESYSCQYDGQLGTHLVSFWMNEMYSLLNGTSCSDPLTRRIGNDAVSVLHQSWYNFNYHP YRVEASRNRSKPAHRDAVNDPTALREWIVADFMCGQEQAAVPVDVRYDLE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/276 Sequence name : 276 Sequence length : 230 VALUES OF COMPUTED PARAMETERS Coef20 : 3.526 CoefTot : -0.321 ChDiff : -10 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.759 1.288 0.027 0.446 MesoH : -0.444 0.211 -0.314 0.192 MuHd_075 : 9.290 2.460 2.041 1.829 MuHd_095 : 8.273 9.897 2.950 1.709 MuHd_100 : 10.827 14.856 4.850 2.613 MuHd_105 : 16.661 18.394 6.287 3.860 Hmax_075 : 12.367 8.167 3.341 3.278 Hmax_095 : 3.763 7.963 0.029 2.634 Hmax_100 : 13.200 15.300 4.179 4.510 Hmax_105 : 14.233 18.317 4.689 4.923 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9929 0.0071 DFMC : 0.9887 0.0113
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 230 LmjF.18.0360 MNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDDKSNIIIYVAGHGAKSYFKFQDTEFLSSSDISETLMM 80 MHQQRRYGRVVFMADTCHAIALCEHVEAPNVVCLAASDAESESYSCQYDGQLGTHLVSFWMNEMYSLLNGTSCSDPLTRR 160 IGNDAVSVLHQSWYNFNYHPYRVEASRNRSKPAHRDAVNDPTALREWIVADFMCGQEQAAVPVDVRYDLE 240 ................................................................................ 80 ................................................................................ 160 ...................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.18.0360 20 GSDVDVR|RF 0.075 . LmjF.18.0360 21 SDVDVRR|FL 0.216 . LmjF.18.0360 29 LSVLQGR|YD 0.114 . LmjF.18.0360 38 ENTPPTR|RL 0.069 . LmjF.18.0360 39 NTPPTRR|LL 0.106 . LmjF.18.0360 45 RLLSDDK|SN 0.071 . LmjF.18.0360 58 VAGHGAK|SY 0.106 . LmjF.18.0360 62 GAKSYFK|FQ 0.078 . LmjF.18.0360 85 MMMHQQR|RY 0.152 . LmjF.18.0360 86 MMHQQRR|YG 0.195 . LmjF.18.0360 89 QQRRYGR|VV 0.442 . LmjF.18.0360 159 CSDPLTR|RI 0.093 . LmjF.18.0360 160 SDPLTRR|IG 0.112 . LmjF.18.0360 182 FNYHPYR|VE 0.076 . LmjF.18.0360 187 YRVEASR|NR 0.087 . LmjF.18.0360 189 VEASRNR|SK 0.128 . LmjF.18.0360 191 ASRNRSK|PA 0.070 . LmjF.18.0360 195 RSKPAHR|DA 0.119 . LmjF.18.0360 205 NDPTALR|EW 0.080 . LmjF.18.0360 226 AVPVDVR|YD 0.073 . ____________________________^_________________

  • Fasta :-

    >LmjF.18.0360 CACGGCATCGACGACGACCATATTCTTCTCTTTTTGAGTGACAGCTTCGCCTGCGATCCA CGAAATGTGTACCCTGCGGAGATCTTTTCGCAGCCCCCCGGAGAGCGCGACGCGAATGAG CATGCGAGCATGAATCTGTACGGCTGCAGCGCGCAAGTGGACTACGCGGGCAGCGACGTG GACGTGCGCCGCTTTCTAAGTGTGCTGCAGGGTCGCTATGACGAGAACACGCCGCCCACG CGGCGGCTCCTTTCGGACGACAAGTCTAACATCATCATCTACGTCGCGGGGCACGGTGCG AAGTCGTACTTCAAGTTTCAGGACACGGAGTTTCTGAGCTCGTCGGACATTTCGGAGACA CTCATGATGATGCACCAGCAGCGGCGGTACGGTCGCGTTGTTTTCATGGCTGATACATGC CATGCGATTGCGCTGTGCGAGCATGTGGAGGCACCGAACGTTGTGTGTCTCGCCGCCTCC GATGCCGAGTCGGAGAGCTACTCGTGCCAGTACGACGGACAACTTGGCACGCATCTGGTT TCCTTTTGGATGAATGAGATGTACTCGTTGCTGAACGGCACGAGCTGCAGCGACCCGCTC ACTCGCCGCATCGGCAACGATGCAGTGTCGGTGCTGCATCAATCGTGGTACAACTTCAAT TATCATCCATACCGAGTGGAAGCGAGTCGAAACCGCTCGAAGCCAGCGCACCGCGACGCT GTGAACGACCCGACTGCTCTGAGAGAGTGGATTGTAGCCGACTTTATGTGTGGCCAGGAG CAGGCAGCGGTACCAGTGGACGTTCGCTACGACCTCGAGTAG
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  • Fasta :-

    MNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDDKSNIIIYVAGHGAKSY FKFQDTEFLSSSDISETLMMMHQQRRYGRVVFMADTCHAIALCEHVEAPNVVCLAASDAE SESYSCQYDGQLGTHLVSFWMNEMYSLLNGTSCSDPLTRRIGNDAVSVLHQSWYNFNYHP YRVEASRNRSKPAHRDAVNDPTALREWIVADFMCGQEQAAVPVDVRYDLE

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LmjF.18.0360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India