LmjF.18.0450 | serine carboxypeptidase (CBP1), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004185      

  • Computed_GO_Functions:  serine-type carboxypeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.18.0450SP0.0004870.9995020.000011CS pos: 29-30. VYA-ST. Pr: 0.7515
No Results

  • Fasta :-

    >LmjF.18.0450 MASFLSTTALLVALLVAMVPWACVPTVYASTPHHGYASCDSSVVQSSGYISIPGVNKTLK HYFYWLFGPRKWPKDGREPPVIMWMTGGPGCSSSMALLMELGPCMMNETSGELEHNTYGW NAEAYLLFVDQPTGVGYSYGDTFNYVHNESEVAEDMYNFLQLFAQRFTSPSITGANDFYI IGESYGGHYVPAVSYRILMGNERGDGLRINLKGIAIGNGLTDPYTQLPYHAQTAYYWCKE KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPTVRASLGASAEAQWSTCNNEVSALFERDYMRNFN FTFPPMLDMGIRVLIYAGDMDFICNWLGNEAWVKALRWFGTDRFNAAPNVEFAVSGRWAG LERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLRGQSLA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/927 Sequence name : 927 Sequence length : 462 VALUES OF COMPUTED PARAMETERS Coef20 : 4.974 CoefTot : -2.015 ChDiff : -14 ZoneTo : 74 KR : 5 DE : 1 CleavSite : 72 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.194 2.376 0.410 0.780 MesoH : 0.362 0.454 -0.179 0.320 MuHd_075 : 36.535 16.218 11.694 7.463 MuHd_095 : 30.739 27.884 10.611 6.243 MuHd_100 : 29.298 25.586 9.188 6.136 MuHd_105 : 40.183 20.565 11.229 7.984 Hmax_075 : 14.100 8.750 2.000 4.860 Hmax_095 : 13.912 20.600 2.958 7.360 Hmax_100 : 7.600 18.400 0.172 6.320 Hmax_105 : 9.700 16.450 0.449 4.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3976 0.6024 DFMC : 0.5069 0.4931
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 462 LmjF.18.0450 MASFLSTTALLVALLVAMVPWACVPTVYASTPHHGYASCDSSVVQSSGYISIPGVNKTLKHYFYWLFGPRKWPKDGREPP 80 VIMWMTGGPGCSSSMALLMELGPCMMNETSGELEHNTYGWNAEAYLLFVDQPTGVGYSYGDTFNYVHNESEVAEDMYNFL 160 QLFAQRFTSPSITGANDFYIIGESYGGHYVPAVSYRILMGNERGDGLRINLKGIAIGNGLTDPYTQLPYHAQTAYYWCKE 240 KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRNSYDIRKQCIGDLCYPMQNTI 320 DFYHKPTVRASLGASAEAQWSTCNNEVSALFERDYMRNFNFTFPPMLDMGIRVLIYAGDMDFICNWLGNEAWVKALRWFG 400 TDRFNAAPNVEFAVSGRWAGLERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLRGQSLA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.18.0450 57 SIPGVNK|TL 0.062 . LmjF.18.0450 60 GVNKTLK|HY 0.076 . LmjF.18.0450 70 YWLFGPR|KW 0.074 . LmjF.18.0450 71 WLFGPRK|WP 0.082 . LmjF.18.0450 74 GPRKWPK|DG 0.080 . LmjF.18.0450 77 KWPKDGR|EP 0.087 . LmjF.18.0450 166 LQLFAQR|FT 0.129 . LmjF.18.0450 196 VPAVSYR|IL 0.182 . LmjF.18.0450 203 ILMGNER|GD 0.084 . LmjF.18.0450 208 ERGDGLR|IN 0.090 . LmjF.18.0450 212 GLRINLK|GI 0.071 . LmjF.18.0450 239 TAYYWCK|EK 0.067 . LmjF.18.0450 241 YYWCKEK|LG 0.060 . LmjF.18.0450 250 APCITEK|AY 0.074 . LmjF.18.0450 265 LPACLEK|TK 0.061 . LmjF.18.0450 267 ACLEKTK|KC 0.064 . LmjF.18.0450 268 CLEKTKK|CN 0.099 . LmjF.18.0450 299 HYYATGR|NS 0.107 . LmjF.18.0450 305 RNSYDIR|KQ 0.107 . LmjF.18.0450 306 NSYDIRK|QC 0.079 . LmjF.18.0450 325 TIDFYHK|PT 0.065 . LmjF.18.0450 329 YHKPTVR|AS 0.074 . LmjF.18.0450 353 VSALFER|DY 0.114 . LmjF.18.0450 357 FERDYMR|NF 0.084 . LmjF.18.0450 372 MLDMGIR|VL 0.095 . LmjF.18.0450 394 GNEAWVK|AL 0.069 . LmjF.18.0450 397 AWVKALR|WF 0.099 . LmjF.18.0450 403 RWFGTDR|FN 0.089 . LmjF.18.0450 417 EFAVSGR|WA 0.144 . LmjF.18.0450 423 RWAGLER|SY 0.139 . LmjF.18.0450 432 GGLSFVR|IY 0.093 . LmjF.18.0450 454 ALFMVHR|FL 0.117 . LmjF.18.0450 457 MVHRFLR|GQ 0.297 . ____________________________^_________________

  • Fasta :-

    >LmjF.18.0450 ATGGCGTCTTTTCTCTCAACCACAGCGCTGCTAGTGGCGCTCCTCGTCGCGATGGTGCCA TGGGCGTGCGTGCCCACCGTGTACGCGAGCACGCCACATCACGGGTACGCGAGCTGCGAC TCATCGGTGGTGCAGTCGAGCGGCTATATCAGCATTCCCGGCGTCAACAAGACGCTGAAG CACTACTTCTACTGGCTGTTCGGCCCGCGTAAGTGGCCCAAAGATGGCCGCGAGCCGCCG GTGATTATGTGGATGACGGGCGGCCCCGGGTGCAGCTCCAGCATGGCCCTGCTCATGGAG CTTGGCCCCTGTATGATGAACGAGACGTCTGGTGAGCTCGAACACAACACCTACGGGTGG AACGCTGAGGCTTACCTGCTGTTCGTGGACCAGCCGACCGGTGTGGGCTACTCGTATGGC GATACGTTCAACTATGTGCACAACGAAAGCGAGGTCGCGGAGGACATGTACAACTTCCTG CAGCTCTTCGCGCAGCGCTTTACGTCGCCGTCGATCACCGGCGCGAACGACTTCTACATC ATTGGTGAGAGCTATGGCGGGCACTATGTTCCTGCAGTGAGCTACCGTATCCTCATGGGC AACGAGCGCGGTGACGGCCTGCGCATCAATCTTAAGGGCATCGCCATCGGCAACGGCCTC ACGGACCCGTACACGCAGCTCCCCTACCACGCCCAAACCGCTTACTACTGGTGCAAGGAG AAGCTGGGTGCTCCGTGCATTACTGAGAAGGCGTATGAGGAGATGCTCTCGTTGCTGCCA GCTTGCTTGGAGAAGACAAAGAAGTGCAACGAAGGGCCTGACGACTCGGACGTGTCGTGC AGCGTGGCCACCGCGCTCTGGGCCGAGTACGTGGATCATTACTATGCAACCGGCCGCAAC AGCTATGATATCCGCAAGCAGTGCATCGGCGACTTGTGCTACCCGATGCAGAATACGATC GACTTTTACCACAAGCCAACCGTCCGAGCATCGCTGGGCGCTAGCGCTGAGGCGCAGTGG TCCACGTGTAACAATGAAGTCAGCGCGCTCTTCGAGAGGGACTACATGCGCAACTTTAAC TTTACCTTCCCACCCATGTTGGATATGGGCATTCGTGTGTTAATCTACGCTGGTGATATG GACTTCATATGTAACTGGCTGGGCAACGAGGCGTGGGTCAAGGCACTGCGGTGGTTTGGT ACGGACCGCTTCAACGCTGCGCCAAATGTGGAGTTCGCCGTCAGCGGTCGCTGGGCTGGT CTGGAGCGCAGTTACGGAGGCCTCAGCTTTGTGCGCATCTACGATGCTGGCCACATGGTA CCAATGGATCAGCCGGAGGTGGCGCTGTTCATGGTGCACCGCTTCCTGCGCGGCCAGAGT TTGGCGTAA
  • Download Fasta

  • Fasta :-

    MASFLSTTALLVALLVAMVPWACVPTVYASTPHHGYASCDSSVVQSSGYISIPGVNKTLK HYFYWLFGPRKWPKDGREPPVIMWMTGGPGCSSSMALLMELGPCMMNETSGELEHNTYGW NAEAYLLFVDQPTGVGYSYGDTFNYVHNESEVAEDMYNFLQLFAQRFTSPSITGANDFYI IGESYGGHYVPAVSYRILMGNERGDGLRINLKGIAIGNGLTDPYTQLPYHAQTAYYWCKE KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPTVRASLGASAEAQWSTCNNEVSALFERDYMRNFN FTFPPMLDMGIRVLIYAGDMDFICNWLGNEAWVKALRWFGTDRFNAAPNVEFAVSGRWAG LERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLRGQSLA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.18.0450138 SGVGYSYGDT0.996unsp

LmjF.18.0450      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India