LmjF.19.0550 | metallo- peptidase, Clan MG, Family M24

_IDPredictionOTHERSPmTPCS_Position
LmjF.19.0550OTHER0.9998160.0000080.000176
No Results

  • Fasta :-

    >LmjF.19.0550 MPCEGCGVGEAGLQCPTCKKLSLPPSFFCTQDCFRAHWGTHKLKHTETKNLPATIPTMTE VDERLFNFTGPLRPGKITPRRAVPKEIARPDYAERNDGVSELEEKDRGSLRVVAHSLKNL HEDYNNAELRRSSDILKIKRVNALSREVLDIACAAVKPGVTTDEIDRIVHEATIERGMYP SPLNYYNFPKSVCTSVNEIICHGIPDNRPLEEGDIVNIDVSCYLDGFHGDLNETVFVGRP DEESVKIVHTAYACMMAGIGVVKPDELYRYIGDAIEARAKKSGCSVVRSYTGHGIGKFFH TAPNVCHYKDNKSPGLIKPGHVFTIEPMINLGTWQDVTWPDNWTSATKDGKRTAQFEHTM VCTPEAVELLTDWKDGIPFYQKQLREWGIPIPAEDPSEIKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/668 Sequence name : 668 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 2.874 CoefTot : -0.253 ChDiff : -8 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.376 0.105 0.518 MesoH : -0.892 0.158 -0.419 0.179 MuHd_075 : 17.976 8.318 4.825 2.833 MuHd_095 : 8.856 4.299 1.970 2.696 MuHd_100 : 12.863 5.718 1.320 3.071 MuHd_105 : 16.093 7.379 4.872 3.054 Hmax_075 : 12.600 11.500 5.193 3.690 Hmax_095 : 11.200 9.600 4.124 3.806 Hmax_100 : 10.800 9.000 2.692 3.590 Hmax_105 : 10.800 6.067 4.075 3.590 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9856 0.0144 DFMC : 0.9741 0.0259
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LmjF.19.0550 MPCEGCGVGEAGLQCPTCKKLSLPPSFFCTQDCFRAHWGTHKLKHTETKNLPATIPTMTEVDERLFNFTGPLRPGKITPR 80 RAVPKEIARPDYAERNDGVSELEEKDRGSLRVVAHSLKNLHEDYNNAELRRSSDILKIKRVNALSREVLDIACAAVKPGV 160 TTDEIDRIVHEATIERGMYPSPLNYYNFPKSVCTSVNEIICHGIPDNRPLEEGDIVNIDVSCYLDGFHGDLNETVFVGRP 240 DEESVKIVHTAYACMMAGIGVVKPDELYRYIGDAIEARAKKSGCSVVRSYTGHGIGKFFHTAPNVCHYKDNKSPGLIKPG 320 HVFTIEPMINLGTWQDVTWPDNWTSATKDGKRTAQFEHTMVCTPEAVELLTDWKDGIPFYQKQLREWGIPIPAEDPSEIK 400 I 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................P....................................... 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.19.0550 19 LQCPTCK|KL 0.065 . LmjF.19.0550 20 QCPTCKK|LS 0.064 . LmjF.19.0550 35 CTQDCFR|AH 0.077 . LmjF.19.0550 42 AHWGTHK|LK 0.066 . LmjF.19.0550 44 WGTHKLK|HT 0.075 . LmjF.19.0550 49 LKHTETK|NL 0.088 . LmjF.19.0550 64 MTEVDER|LF 0.076 . LmjF.19.0550 73 NFTGPLR|PG 0.064 . LmjF.19.0550 76 GPLRPGK|IT 0.103 . LmjF.19.0550 80 PGKITPR|RA 0.100 . LmjF.19.0550 81 GKITPRR|AV 0.274 . LmjF.19.0550 85 PRRAVPK|EI 0.077 . LmjF.19.0550 89 VPKEIAR|PD 0.099 . LmjF.19.0550 95 RPDYAER|ND 0.106 . LmjF.19.0550 105 VSELEEK|DR 0.065 . LmjF.19.0550 107 ELEEKDR|GS 0.105 . LmjF.19.0550 111 KDRGSLR|VV 0.142 . LmjF.19.0550 118 VVAHSLK|NL 0.063 . LmjF.19.0550 130 YNNAELR|RS 0.144 . LmjF.19.0550 131 NNAELRR|SS 0.236 . LmjF.19.0550 137 RSSDILK|IK 0.064 . LmjF.19.0550 139 SDILKIK|RV 0.075 . LmjF.19.0550 140 DILKIKR|VN 0.105 . LmjF.19.0550 146 RVNALSR|EV 0.137 . LmjF.19.0550 157 IACAAVK|PG 0.056 . LmjF.19.0550 167 TTDEIDR|IV 0.100 . LmjF.19.0550 176 HEATIER|GM 0.092 . LmjF.19.0550 190 NYYNFPK|SV 0.149 . LmjF.19.0550 208 HGIPDNR|PL 0.090 . LmjF.19.0550 239 ETVFVGR|PD 0.095 . LmjF.19.0550 246 PDEESVK|IV 0.078 . LmjF.19.0550 263 AGIGVVK|PD 0.062 . LmjF.19.0550 269 KPDELYR|YI 0.165 . LmjF.19.0550 278 GDAIEAR|AK 0.105 . LmjF.19.0550 280 AIEARAK|KS 0.067 . LmjF.19.0550 281 IEARAKK|SG 0.514 *ProP* LmjF.19.0550 288 SGCSVVR|SY 0.151 . LmjF.19.0550 297 TGHGIGK|FF 0.085 . LmjF.19.0550 309 PNVCHYK|DN 0.068 . LmjF.19.0550 312 CHYKDNK|SP 0.083 . LmjF.19.0550 318 KSPGLIK|PG 0.057 . LmjF.19.0550 348 NWTSATK|DG 0.058 . LmjF.19.0550 351 SATKDGK|RT 0.076 . LmjF.19.0550 352 ATKDGKR|TA 0.164 . LmjF.19.0550 374 ELLTDWK|DG 0.059 . LmjF.19.0550 382 GIPFYQK|QL 0.059 . LmjF.19.0550 385 FYQKQLR|EW 0.121 . LmjF.19.0550 400 EDPSEIK|I- 0.058 . ____________________________^_________________

  • Fasta :-

    >LmjF.19.0550 ATGCCCTGCGAAGGCTGCGGCGTCGGCGAGGCCGGCCTGCAGTGCCCCACTTGCAAGAAA CTGAGCTTGCCGCCGAGCTTCTTCTGCACGCAGGACTGCTTCCGGGCGCACTGGGGAACG CACAAGCTGAAGCACACTGAGACGAAGAACCTGCCCGCCACGATCCCCACCATGACGGAG GTAGACGAGCGGCTCTTCAACTTCACGGGGCCACTCCGTCCTGGAAAAATCACGCCACGC CGTGCTGTGCCAAAGGAGATAGCGCGGCCCGACTACGCGGAGCGAAACGACGGCGTTTCC GAGCTGGAGGAGAAAGACCGAGGCAGCCTCCGCGTCGTTGCACACAGCCTCAAGAACTTG CACGAAGACTACAACAACGCCGAGCTGCGCCGGAGCTCCGACATCCTCAAGATCAAGCGT GTGAACGCGCTCTCGCGTGAAGTGCTGGACATCGCCTGCGCGGCGGTGAAGCCGGGCGTC ACAACCGACGAAATCGACCGCATCGTCCACGAGGCGACGATCGAGCGTGGCATGTACCCA TCGCCGCTGAATTACTACAACTTCCCCAAGTCCGTCTGCACCAGCGTGAATGAGATCATC TGCCACGGCATTCCAGACAACCGCCCACTCGAGGAGGGCGACATCGTGAACATCGACGTC TCTTGCTACCTCGACGGCTTCCACGGCGACTTAAACGAAACGGTGTTTGTCGGCAGGCCA GACGAGGAAAGTGTGAAGATTGTGCACACGGCGTATGCCTGCATGATGGCGGGCATCGGC GTTGTGAAGCCGGATGAACTCTACCGCTACATCGGTGACGCCATCGAGGCACGGGCGAAG AAGTCGGGCTGCTCTGTCGTGCGCAGCTACACCGGACATGGTATCGGCAAGTTCTTCCAC ACGGCACCGAACGTCTGCCACTACAAGGACAACAAAAGTCCCGGCCTCATCAAGCCCGGG CACGTCTTCACGATTGAGCCGATGATCAACCTTGGCACGTGGCAGGATGTCACATGGCCT GATAACTGGACGAGTGCCACGAAGGATGGCAAGCGCACCGCGCAGTTTGAGCACACGATG GTGTGCACACCAGAAGCGGTAGAGCTTCTGACGGACTGGAAGGACGGCATACCCTTTTAT CAGAAGCAGCTGAGGGAATGGGGCATTCCGATTCCCGCCGAAGACCCCAGCGAAATCAAA ATCTGA
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  • Fasta :-

    MPCEGCGVGEAGLQCPTCKKLSLPPSFFCTQDCFRAHWGTHKLKHTETKNLPATIPTMTE VDERLFNFTGPLRPGKITPRRAVPKEIARPDYAERNDGVSELEEKDRGSLRVVAHSLKNL HEDYNNAELRRSSDILKIKRVNALSREVLDIACAAVKPGVTTDEIDRIVHEATIERGMYP SPLNYYNFPKSVCTSVNEIICHGIPDNRPLEEGDIVNIDVSCYLDGFHGDLNETVFVGRP DEESVKIVHTAYACMMAGIGVVKPDELYRYIGDAIEARAKKSGCSVVRSYTGHGIGKFFH TAPNVCHYKDNKSPGLIKPGHVFTIEPMINLGTWQDVTWPDNWTSATKDGKRTAQFEHTM VCTPEAVELLTDWKDGIPFYQKQLREWGIPIPAEDPSEIKI

  • title: active site
  • coordinates: H202,D219,D230,H293,E326,E357
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.19.0550100 SNDGVSELEE0.994unspLmjF.19.0550116 SVVAHSLKNL0.995unsp

LmjF.19.0550      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India