LmjF.19.1630 | ATG8/AUT7/APG8/PAZ2, putative

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  • Curated_GO_Processes:  regulation of autophagy      

_IDPredictionOTHERSPmTPCS_Position
LmjF.19.1630OTHER0.9995750.0001970.000228
No Results

  • Fasta :-

    >LmjF.19.1630 MSSRVAGSYKKAHTLEARLRDAEKVRERAPDRILVICEKAENSPVPDLDKSKFLVPPDAT VGGFLVSIRRRITMEAEKALFLFVGDSVPANSTLMSDLFNRYKDEDGFLYVTYSGENTYG GQGLH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/858 Sequence name : 858 Sequence length : 125 VALUES OF COMPUTED PARAMETERS Coef20 : 4.470 CoefTot : 0.003 ChDiff : 0 ZoneTo : 15 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.988 1.153 -0.004 0.499 MesoH : -1.065 0.200 -0.482 0.126 MuHd_075 : 13.873 11.908 2.401 4.590 MuHd_095 : 18.096 9.696 3.223 5.028 MuHd_100 : 22.227 12.164 4.591 6.089 MuHd_105 : 20.026 12.558 5.083 5.552 Hmax_075 : 3.267 8.283 -1.554 2.228 Hmax_095 : -1.838 2.900 -3.277 1.680 Hmax_100 : 2.100 6.100 -1.200 2.800 Hmax_105 : 10.900 8.800 1.123 3.360 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5465 0.4535 DFMC : 0.5739 0.4261
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 125 LmjF.19.1630 MSSRVAGSYKKAHTLEARLRDAEKVRERAPDRILVICEKAENSPVPDLDKSKFLVPPDATVGGFLVSIRRRITMEAEKAL 80 FLFVGDSVPANSTLMSDLFNRYKDEDGFLYVTYSGENTYGGQGLH 160 ................................................................................ 80 ............................................. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.19.1630 4 ---MSSR|VA 0.119 . LmjF.19.1630 10 RVAGSYK|KA 0.090 . LmjF.19.1630 11 VAGSYKK|AH 0.073 . LmjF.19.1630 18 AHTLEAR|LR 0.081 . LmjF.19.1630 20 TLEARLR|DA 0.194 . LmjF.19.1630 24 RLRDAEK|VR 0.068 . LmjF.19.1630 26 RDAEKVR|ER 0.088 . LmjF.19.1630 28 AEKVRER|AP 0.095 . LmjF.19.1630 32 RERAPDR|IL 0.104 . LmjF.19.1630 39 ILVICEK|AE 0.058 . LmjF.19.1630 50 PVPDLDK|SK 0.070 . LmjF.19.1630 52 PDLDKSK|FL 0.067 . LmjF.19.1630 69 GFLVSIR|RR 0.081 . LmjF.19.1630 70 FLVSIRR|RI 0.095 . LmjF.19.1630 71 LVSIRRR|IT 0.248 . LmjF.19.1630 78 ITMEAEK|AL 0.060 . LmjF.19.1630 101 MSDLFNR|YK 0.106 . LmjF.19.1630 103 DLFNRYK|DE 0.070 . ____________________________^_________________

  • Fasta :-

    >LmjF.19.1630 ATGTCTTCCAGAGTAGCTGGGTCGTACAAGAAGGCGCACACGCTGGAGGCACGCCTGCGC GATGCGGAAAAGGTCCGTGAGCGTGCTCCCGATCGCATTCTCGTGATTTGCGAGAAGGCA GAAAACTCGCCCGTTCCTGATCTGGACAAGAGCAAGTTCCTGGTACCGCCGGACGCGACC GTTGGCGGCTTTCTTGTGAGCATCCGTCGTCGCATCACCATGGAGGCCGAGAAGGCACTC TTTCTCTTTGTGGGTGACAGCGTTCCGGCAAACAGCACTCTCATGAGCGACCTCTTCAAT CGCTATAAGGATGAGGACGGGTTCTTGTACGTGACGTACTCTGGCGAGAACACGTACGGC GGGCAGGGGCTGCACTAG
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  • Fasta :-

    MSSRVAGSYKKAHTLEARLRDAEKVRERAPDRILVICEKAENSPVPDLDKSKFLVPPDAT VGGFLVSIRRRITMEAEKALFLFVGDSVPANSTLMSDLFNRYKDEDGFLYVTYSGENTYG GQGLH

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.19.16308 SRVAGSYKKA0.991unsp

LmjF.19.1630      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India