LmjF.20.1550 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.20.1550OTHER0.9968840.0022680.000849
No Results

  • Fasta :-

    >LmjF.20.1550 MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSMIFGLHVDVMRPSGSIWCRVG TIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQAQVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDAKAYEVAKAAAIRLVGEGNYHDLSTPLLGVADFSEYQAVVPGCLCWLGVGNSALG DANNHNYSSRFRMNEAGMELGVKHHVLIIASLMMQTEGSKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/663 Sequence name : 663 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.508 CoefTot : -0.188 ChDiff : -11 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.406 1.665 0.307 0.669 MesoH : -0.069 0.771 -0.140 0.338 MuHd_075 : 9.185 8.938 3.084 1.165 MuHd_095 : 15.578 25.176 6.289 6.283 MuHd_100 : 11.113 19.841 3.692 5.466 MuHd_105 : 3.524 11.981 0.447 3.630 Hmax_075 : 8.517 9.217 -0.061 3.840 Hmax_095 : 19.300 22.800 3.309 7.810 Hmax_100 : 19.000 21.900 3.018 7.250 Hmax_105 : 10.700 16.100 0.679 5.696 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8547 0.1453 DFMC : 0.9378 0.0622
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LmjF.20.1550 MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADM 80 DALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSM 160 IFGLHVDVMRPSGSIWCRVGTIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSITT 240 FEGGRGSYNVIPDTVRMRGTLRCLDRDTQAQVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDAKAYEVAKAAAIRLV 320 GEGNYHDLSTPLLGVADFSEYQAVVPGCLCWLGVGNSALGDANNHNYSSRFRMNEAGMELGVKHHVLIIASLMMQTEGSK 400 E 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.20.1550 19 PEVVQWR|RH 0.088 . LmjF.20.1550 20 EVVQWRR|HI 0.146 . LmjF.20.1550 53 PAPLDIR|RL 0.065 . LmjF.20.1550 54 APLDIRR|LT 0.104 . LmjF.20.1550 65 SVVADLR|GG 0.098 . LmjF.20.1550 77 GPMYALR|AD 0.116 . LmjF.20.1550 96 GEPFSSK|RP 0.067 . LmjF.20.1550 97 EPFSSKR|PG 0.139 . LmjF.20.1550 118 MLLGAVK|VL 0.060 . LmjF.20.1550 124 KVLCQMR|DR 0.097 . LmjF.20.1550 126 LCQMRDR|IR 0.107 . LmjF.20.1550 128 QMRDRIR|GT 0.097 . LmjF.20.1550 132 RIRGTVR|FV 0.174 . LmjF.20.1550 147 VIPSGAK|QL 0.056 . LmjF.20.1550 170 LHVDVMR|PS 0.103 . LmjF.20.1550 178 SGSIWCR|VG 0.101 . LmjF.20.1550 194 DFDIVIR|GA 0.122 . LmjF.20.1550 226 LQSVVSR|RV 0.166 . LmjF.20.1550 227 QSVVSRR|VS 0.124 . LmjF.20.1550 232 RRVSALK|AP 0.065 . LmjF.20.1550 245 TTFEGGR|GS 0.090 . LmjF.20.1550 256 VIPDTVR|MR 0.077 . LmjF.20.1550 258 PDTVRMR|GT 0.091 . LmjF.20.1550 262 RMRGTLR|CL 0.092 . LmjF.20.1550 266 TLRCLDR|DT 0.183 . LmjF.20.1550 285 IIAGITK|AH 0.076 . LmjF.20.1550 307 VTYNDAK|AY 0.071 . LmjF.20.1550 313 KAYEVAK|AA 0.079 . LmjF.20.1550 318 AKAAAIR|LV 0.170 . LmjF.20.1550 370 NHNYSSR|FR 0.124 . LmjF.20.1550 372 NYSSRFR|MN 0.142 . LmjF.20.1550 383 GMELGVK|HH 0.058 . LmjF.20.1550 400 MQTEGSK|E- 0.057 . ____________________________^_________________

  • Fasta :-

    >LmjF.20.1550 ATGTCATTTGTGCAGACACTAATCACAGCTGTGCAGCCTGAGGTGGTGCAATGGCGCCGC CACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTGGCG GACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGCGTC GTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGACATG GATGCGCTGCCGCTGCAGGAGGAGAGCGGCGAGCCCTTCAGCTCGAAGCGGCCAGGCGTG ATGCACGCATGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTGCTG TGCCAGATGCGCGACCGCATCCGTGGGACCGTTCGCTTTGTTTTCCAGCACGCCGAGGAG GTGATCCCGAGCGGCGCGAAGCAGCTGGTGGGCCTTGGTGTGCTGGACGGCGTGTCCATG ATCTTTGGGCTGCACGTCGACGTCATGCGTCCCTCTGGGTCCATCTGGTGCCGTGTAGGA ACAATTATGGGTGCGTGCAACGACTTTGACATTGTGATCCGCGGCGCTGGCGGGCATGCC TCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAACCTC CAGTCCGTTGTATCGCGCCGCGTGAGCGCGCTGAAGGCTCCTGTACTGAGCATTACCACC TTCGAGGGCGGGAGAGGAAGCTATAACGTGATTCCGGATACCGTGCGCATGCGCGGCACA TTGCGCTGCCTCGACCGCGACACTCAGGCTCAGGTGCCCTCTCTGATGGAGGAGATCATC GCCGGCATCACAAAGGCACACGGCGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAACATC GTGACGTACAACGACGCGAAGGCGTACGAGGTAGCCAAGGCGGCGGCGATTCGTCTTGTC GGTGAGGGCAACTATCATGACCTCTCCACTCCTCTTCTGGGGGTCGCAGATTTTTCGGAA TATCAAGCGGTGGTACCCGGCTGTCTGTGCTGGCTGGGCGTGGGAAACAGCGCTTTGGGA GACGCCAACAATCACAACTACAGCTCAAGGTTCCGAATGAACGAGGCAGGGATGGAGCTT GGTGTGAAGCACCATGTGCTCATAATTGCATCGCTCATGATGCAGACAGAAGGCTCGAAG GAGTAG
  • Download Fasta

  • Fasta :-

    MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSMIFGLHVDVMRPSGSIWCRVG TIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQAQVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDAKAYEVAKAAAIRLVGEGNYHDLSTPLLGVADFSEYQAVVPGCLCWLGVGNSALG DANNHNYSSRFRMNEAGMELGVKHHVLIIASLMMQTEGSKE

  • title: metal binding site
  • coordinates: C104,H106,E139,E140,H165,H365
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.20.1550229 SSRRVSALKA0.992unspLmjF.20.1550229 SSRRVSALKA0.992unspLmjF.20.1550229 SSRRVSALKA0.992unspLmjF.20.155056 TIRRLTPNSV0.99unspLmjF.20.155094 SGEPFSSKRP0.992unsp

LmjF.20.1550      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India