LmjF.20.1570 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.20.1570OTHER0.9998460.0001310.000024
No Results

  • Fasta :-

    >LmjF.20.1570 MQPSISFIDAVKDEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRPG TLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVTQ IVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDAKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLVGIRDEAFG SVYTEHSSKFRIEESALQAGVMMHVGTIVKLMME
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/402 Sequence name : 402 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.074 CoefTot : -0.184 ChDiff : -17 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.665 0.153 0.669 MesoH : -0.051 0.728 -0.119 0.348 MuHd_075 : 27.155 21.492 8.301 4.402 MuHd_095 : 29.275 21.912 8.331 5.604 MuHd_100 : 30.000 22.410 7.448 6.221 MuHd_105 : 25.528 18.311 5.253 5.625 Hmax_075 : 16.217 18.433 3.147 5.460 Hmax_095 : 14.300 15.200 1.395 5.550 Hmax_100 : 17.900 15.900 1.982 6.070 Hmax_105 : 8.487 10.850 -0.402 4.664 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8323 0.1677 DFMC : 0.8580 0.1420
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 LmjF.20.1570 MQPSISFIDAVKDEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADM 80 DALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSM 160 IFGLHVAAEYPVGTISTRPGTLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVTQ 240 IVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDAKAYEVVKSVAEEML 320 GKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLVGIRDEAFGSVYTEHSSKFRIEESALQAGVMMHVGTIVKLMME 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.20.1570 12 SFIDAVK|DE 0.059 . LmjF.20.1570 19 DEVVQWR|RH 0.089 . LmjF.20.1570 20 EVVQWRR|HI 0.137 . LmjF.20.1570 53 PAPLDIR|RL 0.065 . LmjF.20.1570 54 APLDIRR|LT 0.104 . LmjF.20.1570 65 SVVADLR|GG 0.098 . LmjF.20.1570 77 GPMYALR|AD 0.116 . LmjF.20.1570 96 GEPFSSK|RP 0.067 . LmjF.20.1570 97 EPFSSKR|PG 0.139 . LmjF.20.1570 118 MLLGAVK|VL 0.060 . LmjF.20.1570 124 KVLCQMR|DR 0.097 . LmjF.20.1570 126 LCQMRDR|IR 0.107 . LmjF.20.1570 128 QMRDRIR|GT 0.097 . LmjF.20.1570 132 RIRGTVR|FV 0.174 . LmjF.20.1570 147 VVPSGAK|QL 0.055 . LmjF.20.1570 178 VGTISTR|PG 0.073 . LmjF.20.1570 194 DFDIVIR|GA 0.126 . LmjF.20.1570 226 LQSVVSR|RV 0.166 . LmjF.20.1570 227 QSVVSRR|VS 0.124 . LmjF.20.1570 232 RRVSALK|AP 0.063 . LmjF.20.1570 256 VIPDTVR|MR 0.079 . LmjF.20.1570 258 PDTVRMR|GT 0.091 . LmjF.20.1570 262 RMRGTLR|CL 0.090 . LmjF.20.1570 266 TLRCLDR|DT 0.153 . LmjF.20.1570 271 DRDTQAR|VP 0.099 . LmjF.20.1570 285 IIAGITK|AH 0.076 . LmjF.20.1570 307 VTYNDAK|AY 0.071 . LmjF.20.1570 313 KAYEVVK|SV 0.103 . LmjF.20.1570 322 AEEMLGK|DA 0.077 . LmjF.20.1570 328 KDAFVVK|EE 0.062 . LmjF.20.1570 355 FSLVGIR|DE 0.070 . LmjF.20.1570 369 YTEHSSK|FR 0.061 . LmjF.20.1570 371 EHSSKFR|IE 0.121 . LmjF.20.1570 390 HVGTIVK|LM 0.056 . ____________________________^_________________

  • Fasta :-

    >LmjF.20.1570 ATGCAGCCGTCCATCTCATTCATCGACGCTGTAAAGGATGAGGTGGTGCAGTGGCGCCGC CACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTGGCG GACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGCGTC GTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGACATG GATGCGCTGCCGCTGCAAGAGGAGAGCGGCGAGCCCTTCAGCTCGAAGCGGCCAGGCGTG ATGCACGCATGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTGCTG TGCCAGATGCGCGACCGCATCCGTGGGACCGTTCGCTTTGTTTTCCAGCACGCCGAGGAG GTGGTCCCGAGCGGCGCGAAGCAGCTGGTGGGCCTTGGTGTGCTGGACGGCGTGTCCATG ATCTTTGGGCTGCACGTCGCTGCAGAGTACCCTGTCGGCACCATCTCGACCCGACCGGGC ACCCTCTGCGGTGCGTGCGACGACTTTGACATTGTGATCCGCGGCGCTGGCGGGCATGCC TCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAACCTC CAGTCCGTTGTATCGCGCCGCGTGAGCGCGCTGAAGGCTCCTGTACTGAGCGTAACGCAG ATCGTGGGCGGCACCGGTGCGTACAACGTGATTCCGGATACCGTGCGCATGCGCGGCACA CTGCGCTGCCTCGACCGCGACACTCAGGCTCGGGTGCCCTCTCTGATGGAGGAGATCATC GCCGGCATCACAAAGGCACACGGCGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAACATC GTGACGTACAACGACGCGAAGGCGTACGAAGTGGTGAAGAGCGTAGCTGAGGAAATGCTT GGTAAAGATGCGTTTGTTGTGAAGGAGGAGCCGATGTTCGGCGTGGAGGACTTCTCCGAG TACCAGGCAGTGATCCCGGGCTGTTTTTCTCTGGTGGGCATTCGCGATGAAGCATTTGGC TCCGTGTACACGGAGCACAGCTCGAAGTTCAGAATTGAGGAGTCAGCTTTGCAGGCCGGT GTGATGATGCACGTGGGCACCATTGTGAAACTGATGATGGAGTGA
  • Download Fasta

  • Fasta :-

    MQPSISFIDAVKDEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRPG TLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVTQ IVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDAKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLVGIRDEAFG SVYTEHSSKFRIEESALQAGVMMHVGTIVKLMME

    No Results
  • title: tetramer interface
  • coordinates: G184,D188,F189,D190,H199,A200,S201,P203,E204,C206,V207,D208,I210,L211,S214,E215,V217,A218,N219,Q221,S222,V224,S225,R226,R227,V228,S229,A230,K232,A233,P234,V235,L236,S237,V238,T239,Q240,I241,V242,G243,G244,T245,A247,Y248,N249,V250,I251,P252,R258,G259,T260,R262,E278,I279,A281,G282,I283,A286,H287,V326,E329,E330
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.20.157094 SGEPFSSKRP0.992unspLmjF.20.157094 SGEPFSSKRP0.992unspLmjF.20.157094 SGEPFSSKRP0.992unspLmjF.20.1570229 SSRRVSALKA0.992unspLmjF.20.15706 SQPSISFIDA0.993unspLmjF.20.157056 TIRRLTPNSV0.99unsp

LmjF.20.1570      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India