LmjF.21.1830 | proteasome subunit alpha type-5, putative

UniProt_ID: Q4QC00

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs: GO:0005829 GO:0005634 GO:0005839
Curated_GO_Components: cytosol nucleus proteasome core complex
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes: ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmjF.21.1830	OTHER	0.999845	0.000069	0.000086

No Results

Fasta :-
>LmjF.21.1830 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPKGVVLAAEKRVPSTLVV PSSMSKIMEIDSHIAAVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSV FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS RMPE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/252 Sequence name : 252 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 3.598 CoefTot : 0.111 ChDiff : -8 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.665 1.412 0.019 0.486 MesoH : -0.445 0.549 -0.322 0.220 MuHd_075 : 25.215 13.992 6.120 5.424 MuHd_095 : 21.259 12.127 5.893 4.467 MuHd_100 : 17.996 13.742 4.133 4.822 MuHd_105 : 14.435 14.041 2.842 5.116 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.200 5.600 0.820 3.320 Hmax_100 : 2.400 2.900 -1.503 2.760 Hmax_105 : -5.300 3.000 -3.944 2.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9142 0.0858 DFMC : 0.9152 0.0848

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 LmjF.21.1830 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPKGVVLAAEKRVPSTLVVPSSMSKIMEIDSHIAAVMSG 80 MVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLSIQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSG 160 THTRYDAQAIGGGAEAAQSVFTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS 240 RMPE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.21.1830 5 --MFTSK|SE 0.076 . LmjF.21.1830 10 SKSEYDR|GV 0.163 . LmjF.21.1830 20 TFSPEGR|IF 0.122 . LmjF.21.1830 32 YAVEAIK|LG 0.063 . LmjF.21.1830 41 STSLGIR|TP 0.081 . LmjF.21.1830 44 LGIRTPK|GV 0.148 . LmjF.21.1830 52 VVLAAEK|RV 0.057 . LmjF.21.1830 53 VLAAEKR|VP 0.131 . LmjF.21.1830 66 VPSSMSK|IM 0.066 . LmjF.21.1830 86 GMVADAR|IL 0.086 . LmjF.21.1830 93 ILVEHAR|VE 0.101 . LmjF.21.1830 100 VESQNHR|FT 0.128 . LmjF.21.1830 129 FGESGGK|RK 0.053 . LmjF.21.1830 130 GESGGKR|KL 0.190 . LmjF.21.1830 131 ESGGKRK|LM 0.092 . LmjF.21.1830 135 KRKLMSR|PF 0.118 . LmjF.21.1830 149 IAGVDEK|GP 0.060 . LmjF.21.1830 164 PSGTHTR|YD 0.147 . LmjF.21.1830 184 QSVFTER|YH 0.091 . LmjF.21.1830 187 FTERYHR|NM 0.167 . LmjF.21.1830 203 LAVDILK|QV 0.077 . LmjF.21.1830 221 IEVAVVR|AD 0.145 . LmjF.21.1830 226 VRADDGK|LH 0.062 . LmjF.21.1830 236 YTPTEIK|AI 0.060 . LmjF.21.1830 241 IKAIMSR|MP 0.103 . ____________________________^_________________

Fasta :-
>LmjF.21.1830 ATGTTCACCTCCAAGTCTGAGTACGACCGCGGCGTGAACACCTTCAGCCCGGAAGGTCGC ATTTTCCAGATCGAGTATGCTGTGGAGGCCATCAAACTGGGTAGTACCAGCCTCGGAATC CGCACGCCTAAGGGCGTCGTTCTTGCCGCGGAGAAACGCGTGCCATCGACCTTGGTCGTT CCGTCCAGCATGAGTAAGATTATGGAGATCGACAGCCACATTGCGGCTGTCATGAGCGGC ATGGTTGCAGATGCGCGCATCCTTGTCGAGCACGCCCGCGTGGAGTCGCAGAACCACCGC TTCACCTACAACGAGCCCATGTCTGTGGAGTCCTGCACGCTAGCGACGTGCGACCTGTCG ATCCAGTTTGGTGAGAGCGGTGGAAAGCGCAAGCTCATGTCGCGCCCGTTCGGCGTTTCG TTGCTCATCGCCGGCGTAGATGAAAAGGGCCCGCAGCTGTGGCAGACAGACCCCAGCGGC ACGCACACGCGCTACGACGCCCAAGCCATTGGTGGCGGTGCCGAGGCGGCGCAGAGTGTC TTCACGGAGCGCTACCACCGAAACATGACACTGGAAGAGGGCGAGACGCTCGCGGTGGAC ATTCTGAAGCAGGTGATGGAGGACCAGCTGTCGCCGGAGAACATAGAGGTGGCCGTAGTG CGGGCCGACGACGGCAAGCTGCACATGTACACACCCACAGAAATCAAAGCAATCATGAGT CGCATGCCGGAGTAA
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Fasta :-

MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPKGVVLAAEKRVPSTLVV PSSMSKIMEIDSHIAAVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSV FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS RMPE

Proteasome subunits

title: active site
coordinates: S35,E51,R53,K66,G172

No Results

	ID	Site	Peptide	Score	Method
	LmjF.21.1830	211 S	EDQLSPENI	0.997	unsp

LmjF.21.1830 | proteasome subunit alpha type-5, putative

ID's

UniProt_ID: Q4QC00

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs: GO:0005829 GO:0005634 GO:0005839

Curated_GO_Components: cytosol nucleus proteasome core complex

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes: ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

LmjF.21.1830

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India