LmjF.22.0570 | proteasome regulatory ATPase subunit 1, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.22.0570OTHER0.9999500.0000160.000034
No Results

  • Fasta :-

    >LmjF.22.0570 MSNEKGACQTKNTVRVKDDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHV EELNKMGGMKESEMGLAPAVQWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIR EHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLPPRIDRSVSMMQVEDKPDVTY ADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQ RTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILR IHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFAIRARRKTITEKDFLDSVNKV VKGQHKFSATAKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/751 Sequence name : 751 Sequence length : 437 VALUES OF COMPUTED PARAMETERS Coef20 : 3.384 CoefTot : -0.857 ChDiff : -5 ZoneTo : 17 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.247 0.888 -0.116 0.455 MesoH : -1.084 0.240 -0.438 0.126 MuHd_075 : 10.716 5.839 1.701 1.348 MuHd_095 : 17.676 2.765 2.081 2.050 MuHd_100 : 23.789 3.159 3.976 2.990 MuHd_105 : 27.020 6.558 5.238 4.215 Hmax_075 : -11.550 -3.200 -4.297 -0.980 Hmax_095 : -11.287 -5.688 -5.548 -1.059 Hmax_100 : -6.000 -3.100 -4.002 -0.180 Hmax_105 : -2.300 -0.500 -3.206 -0.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9792 0.0208 DFMC : 0.9625 0.0375
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 437 LmjF.22.0570 MSNEKGACQTKNTVRVKDDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHVEELNKMGGMKESEMGLAPAV 80 QWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIREHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLP 160 PRIDRSVSMMQVEDKPDVTYADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD 240 ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQRTMLEMVNQMDGFDSRGNIK 320 VIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILRIHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFA 400 IRARRKTITEKDFLDSVNKVVKGQHKFSATAKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ....P........................................................................... 240 ................................................................................ 320 ................................................................................ 400 ..................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.22.0570 5 --MSNEK|GA 0.074 . LmjF.22.0570 11 KGACQTK|NT 0.068 . LmjF.22.0570 15 QTKNTVR|VK 0.082 . LmjF.22.0570 17 KNTVRVK|DD 0.100 . LmjF.22.0570 21 RVKDDDK|EE 0.056 . LmjF.22.0570 24 DDDKEEK|EI 0.065 . LmjF.22.0570 31 EIIPLDK|DD 0.072 . LmjF.22.0570 50 PYHASIK|EL 0.072 . LmjF.22.0570 57 ELEEFVK|SH 0.076 . LmjF.22.0570 65 HVEELNK|MG 0.068 . LmjF.22.0570 70 NKMGGMK|ES 0.075 . LmjF.22.0570 89 DLNSDQK|VL 0.067 . LmjF.22.0570 93 DQKVLER|EN 0.071 . LmjF.22.0570 101 NPLHVGR|CE 0.086 . LmjF.22.0570 104 HVGRCER|IL 0.343 . LmjF.22.0570 108 CERILNK|GQ 0.071 . LmjF.22.0570 114 KGQDDAR|YV 0.153 . LmjF.22.0570 120 RYVISIR|EH 0.081 . LmjF.22.0570 124 SIREHAK|YV 0.121 . LmjF.22.0570 132 VVTIGER|VA 0.066 . LmjF.22.0570 143 DIEESMR|VG 0.075 . LmjF.22.0570 152 IVMGYSK|IQ 0.056 . LmjF.22.0570 162 EIPLPPR|ID 0.073 . LmjF.22.0570 165 LPPRIDR|SV 0.670 *ProP* LmjF.22.0570 175 MMQVEDK|PD 0.065 . LmjF.22.0570 187 ADVGGVK|EQ 0.056 . LmjF.22.0570 192 VKEQIER|IR 0.081 . LmjF.22.0570 194 EQIERIR|EV 0.111 . LmjF.22.0570 206 PITHPEK|YT 0.069 . LmjF.22.0570 216 LGIDPPK|GV 0.077 . LmjF.22.0570 228 GPPGTGK|TL 0.061 . LmjF.22.0570 233 GKTLLAK|AV 0.074 . LmjF.22.0570 238 AKAVANR|TD 0.087 . LmjF.22.0570 245 TDATFIR|VI 0.154 . LmjF.22.0570 254 GSELVQR|YI 0.183 . LmjF.22.0570 261 YIGEGAR|MI 0.098 . LmjF.22.0570 264 EGARMIR|EI 0.291 . LmjF.22.0570 271 EIFQLAR|TK 0.084 . LmjF.22.0570 273 FQLARTK|KA 0.071 . LmjF.22.0570 274 QLARTKK|AC 0.379 . LmjF.22.0570 290 DAVGGSR|GS 0.113 . LmjF.22.0570 301 GDDEIQR|TM 0.074 . LmjF.22.0570 316 MDGFDSR|GN 0.123 . LmjF.22.0570 320 DSRGNIK|VI 0.062 . LmjF.22.0570 327 VIMATNR|PD 0.075 . LmjF.22.0570 337 LDPALTR|PG 0.074 . LmjF.22.0570 340 ALTRPGR|MD 0.259 . LmjF.22.0570 343 RPGRMDR|KL 0.494 . LmjF.22.0570 344 PGRMDRK|LE 0.070 . LmjF.22.0570 355 LPDLEGR|TN 0.082 . LmjF.22.0570 360 GRTNILR|IH 0.096 . LmjF.22.0570 364 ILRIHSR|SL 0.185 . LmjF.22.0570 370 RSLSCEK|DV 0.081 . LmjF.22.0570 373 SCEKDVR|FE 0.082 . LmjF.22.0570 379 RFELIAR|LC 0.065 . LmjF.22.0570 390 TTGADLR|SV 0.284 . LmjF.22.0570 402 AGMFAIR|AR 0.085 . LmjF.22.0570 404 MFAIRAR|RK 0.116 . LmjF.22.0570 405 FAIRARR|KT 0.390 . LmjF.22.0570 406 AIRARRK|TI 0.091 . LmjF.22.0570 411 RKTITEK|DF 0.071 . LmjF.22.0570 419 FLDSVNK|VV 0.065 . LmjF.22.0570 422 SVNKVVK|GQ 0.077 . LmjF.22.0570 426 VVKGQHK|FS 0.072 . LmjF.22.0570 432 KFSATAK|YM 0.076 . ____________________________^_________________

  • Fasta :-

    >LmjF.22.0570 ATGTCGAACGAGAAGGGCGCGTGCCAGACCAAGAACACGGTCCGCGTGAAGGACGACGAC AAGGAGGAGAAGGAGATCATCCCACTGGACAAGGATGACATTGCGCTGCTGAACCTGTAC GGCTCCGGCCCCTACCACGCAAGCATCAAGGAGCTTGAGGAGTTTGTGAAGTCGCACGTG GAGGAGCTGAACAAGATGGGTGGCATGAAGGAGAGTGAGATGGGTCTCGCGCCGGCTGTG CAGTGGGACCTGAACAGTGACCAGAAGGTGCTGGAGCGCGAAAATCCACTGCACGTTGGC CGCTGCGAGCGCATCCTCAACAAGGGCCAAGACGATGCCCGGTATGTGATCAGCATCCGC GAGCACGCCAAGTACGTCGTCACCATCGGCGAGCGTGTCGCACCGGAGGATATTGAGGAG TCCATGCGTGTTGGCATTGTCATGGGATACAGTAAGATCCAGATCGAGATCCCACTGCCG CCGCGCATCGATCGATCCGTGTCAATGATGCAGGTAGAGGACAAGCCCGACGTGACCTAC GCCGACGTGGGCGGTGTCAAGGAGCAGATCGAACGCATTCGTGAGGTGGTGGAGCTGCCC ATAACACACCCGGAGAAGTACACACAGCTGGGCATTGATCCCCCGAAGGGTGTGCTGCTC TATGGCCCTCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCCGTGGCAAACCGCACGGAT GCCACGTTCATTCGTGTGATCGGCTCCGAGCTAGTGCAGCGGTACATTGGCGAAGGCGCG CGCATGATTCGGGAGATCTTCCAGCTGGCGCGCACGAAGAAGGCGTGCATTATCTTCTTC GACGAGGTCGACGCCGTCGGTGGCAGCCGCGGCAGCGGCGACGGCGATGACGAGATTCAG CGCACCATGCTGGAGATGGTGAATCAGATGGACGGCTTCGACTCACGCGGCAACATCAAG GTAATCATGGCGACGAACCGGCCTGACACGCTAGACCCCGCTCTGACTCGGCCGGGGCGC ATGGATCGCAAGCTCGAAATTGGTCTGCCGGACTTGGAGGGCCGCACGAACATCCTGCGT ATCCATTCGCGCTCTCTCTCATGCGAAAAGGACGTGCGGTTCGAGTTGATTGCCAGGCTG TGCCCAAACACCACCGGCGCTGATCTGCGGTCGGTTTGCACGGAGGCCGGCATGTTCGCC ATCCGCGCCCGCCGCAAGACAATCACCGAGAAGGATTTCCTGGACTCGGTGAACAAGGTA GTGAAGGGCCAGCACAAGTTCAGCGCCACTGCCAAGTACATGGTGTACAACTAA
  • Download Fasta

  • Fasta :-

    MSNEKGACQTKNTVRVKDDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHV EELNKMGGMKESEMGLAPAVQWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIR EHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLPPRIDRSVSMMQVEDKPDVTY ADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQ RTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILR IHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFAIRARRKTITEKDFLDSVNKV VKGQHKFSATAKYMVYN

  • title: ATP binding site
  • coordinates: P223,P224,G225,T226,G227,K228,T229,L230,D281,N326
No Results
No Results
IDSitePeptideScoreMethod
LmjF.22.0570292 SGSRGSGDGD0.991unsp

LmjF.22.0570      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India