LmjF.24.0420 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.24.0420OTHER0.9999560.0000400.000004
No Results

  • Fasta :-

    >LmjF.24.0420 MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYALVLLFKWQS SEQASPLGTVVKDAPVFFAKQVIHNACATLAIMNTLCNYPDQVELGPKVQRYLSFCQELD PEMRGSLLDSFDELREAHNSFAPQSAFTKDGPSPKDADVYHFVSFVYRHGHIWELDGLQE GPLQCREATDANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA ALRAEEKPTTALDEELAEMLLLRKKDKEANVRRRHDYNAMIVALLKTLAERGKLEKVVAE VQAKASK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/547 Sequence name : 547 Sequence length : 307 VALUES OF COMPUTED PARAMETERS Coef20 : 3.778 CoefTot : -0.141 ChDiff : -14 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 1.288 0.036 0.499 MesoH : -0.244 0.521 -0.340 0.276 MuHd_075 : 8.350 6.112 2.068 1.432 MuHd_095 : 15.936 9.168 5.232 2.048 MuHd_100 : 15.160 7.582 5.654 1.049 MuHd_105 : 13.998 6.169 5.533 1.458 Hmax_075 : 2.200 5.017 -0.462 2.730 Hmax_095 : 3.150 5.775 0.512 2.231 Hmax_100 : 10.000 9.100 2.728 2.870 Hmax_105 : 10.800 9.900 3.060 2.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9593 0.0407 DFMC : 0.9453 0.0547
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 307 LmjF.24.0420 MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYALVLLFKWQSSEQASPLGTVVKDAPVFFAK 80 QVIHNACATLAIMNTLCNYPDQVELGPKVQRYLSFCQELDPEMRGSLLDSFDELREAHNSFAPQSAFTKDGPSPKDADVY 160 HFVSFVYRHGHIWELDGLQEGPLQCREATDANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA 240 ALRAEEKPTTALDEELAEMLLLRKKDKEANVRRRHDYNAMIVALLKTLAERGKLEKVVAEVQAKASK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.24.0420 7 MPSDESR|WC 0.096 . LmjF.24.0420 19 SDPAVFR|EI 0.102 . LmjF.24.0420 28 IQTVGVK|GV 0.079 . LmjF.24.0420 57 ALVLLFK|WQ 0.068 . LmjF.24.0420 72 PLGTVVK|DA 0.076 . LmjF.24.0420 80 APVFFAK|QV 0.096 . LmjF.24.0420 108 QVELGPK|VQ 0.052 . LmjF.24.0420 111 LGPKVQR|YL 0.102 . LmjF.24.0420 124 ELDPEMR|GS 0.067 . LmjF.24.0420 135 DSFDELR|EA 0.099 . LmjF.24.0420 149 PQSAFTK|DG 0.067 . LmjF.24.0420 155 KDGPSPK|DA 0.108 . LmjF.24.0420 168 FVSFVYR|HG 0.121 . LmjF.24.0420 186 EGPLQCR|EA 0.092 . LmjF.24.0420 194 ATDANYR|EA 0.080 . LmjF.24.0420 203 LVEVVQR|RI 0.097 . LmjF.24.0420 204 VEVVQRR|ID 0.147 . LmjF.24.0420 211 IDDIAAK|DT 0.089 . LmjF.24.0420 237 PVTVLEK|KI 0.058 . LmjF.24.0420 238 VTVLEKK|IA 0.075 . LmjF.24.0420 243 KKIAALR|AE 0.082 . LmjF.24.0420 247 ALRAEEK|PT 0.068 . LmjF.24.0420 263 AEMLLLR|KK 0.084 . LmjF.24.0420 264 EMLLLRK|KD 0.058 . LmjF.24.0420 265 MLLLRKK|DK 0.115 . LmjF.24.0420 267 LLRKKDK|EA 0.080 . LmjF.24.0420 272 DKEANVR|RR 0.084 . LmjF.24.0420 273 KEANVRR|RH 0.143 . LmjF.24.0420 274 EANVRRR|HD 0.161 . LmjF.24.0420 286 MIVALLK|TL 0.058 . LmjF.24.0420 291 LKTLAER|GK 0.079 . LmjF.24.0420 293 TLAERGK|LE 0.064 . LmjF.24.0420 296 ERGKLEK|VV 0.079 . LmjF.24.0420 304 VAEVQAK|AS 0.067 . LmjF.24.0420 307 VQAKASK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >LmjF.24.0420 ATGCCCAGCGATGAGAGCCGTTGGTGTTTAATCGAGAGCGATCCGGCGGTGTTCAGGGAG ATCATCCAAACCGTCGGCGTGAAGGGGGTCTCCGTGGAGGACCTCATTATGCTCGACTCC TCGATGCTGGAGCAGTACGAGCACGTCTACGCCCTTGTGTTGCTGTTCAAGTGGCAGTCG TCGGAGCAGGCGTCGCCGCTCGGCACCGTCGTGAAGGACGCGCCGGTGTTCTTCGCCAAG CAGGTGATCCACAACGCCTGCGCCACGCTCGCCATCATGAACACGCTGTGCAACTACCCG GATCAGGTGGAGCTGGGGCCAAAGGTGCAGAGATACCTGAGCTTCTGCCAGGAGCTCGAC CCGGAGATGCGCGGCTCGCTTCTAGACAGCTTTGATGAGCTGCGCGAGGCACACAACTCC TTCGCGCCACAATCGGCGTTTACGAAAGACGGGCCGTCGCCAAAGGACGCGGATGTGTAT CACTTCGTCTCCTTTGTATACCGCCACGGACACATCTGGGAGCTCGATGGGCTGCAGGAG GGCCCGCTGCAGTGCCGCGAGGCGACGGACGCGAACTACCGAGAGGCGCTCGTGGAGGTA GTGCAGCGGCGCATCGACGACATTGCAGCAAAGGACACGACGGGTGCCGGGCAGGGCATC TCCTTCTCGCTTATGACGATTGTGGACGACCCGGTCACGGTGTTGGAGAAGAAGATTGCC GCTCTCCGGGCCGAGGAAAAGCCGACGACGGCGCTCGACGAAGAGCTGGCGGAGATGCTG TTGCTGCGCAAGAAGGACAAGGAGGCTAACGTGCGTCGCCGTCATGACTACAATGCCATG ATCGTGGCGCTGCTGAAGACCCTGGCGGAGCGCGGCAAGCTGGAGAAGGTGGTGGCGGAG GTGCAGGCGAAGGCCTCCAAGTAG
  • Download Fasta

  • Fasta :-

    MPSDESRWCLIESDPAVFREIIQTVGVKGVSVEDLIMLDSSMLEQYEHVYALVLLFKWQS SEQASPLGTVVKDAPVFFAKQVIHNACATLAIMNTLCNYPDQVELGPKVQRYLSFCQELD PEMRGSLLDSFDELREAHNSFAPQSAFTKDGPSPKDADVYHFVSFVYRHGHIWELDGLQE GPLQCREATDANYREALVEVVQRRIDDIAAKDTTGAGQGISFSLMTIVDDPVTVLEKKIA ALRAEEKPTTALDEELAEMLLLRKKDKEANVRRRHDYNAMIVALLKTLAERGKLEKVVAE VQAKASK

  • title: catalytic site
  • coordinates: Q81,C87,H161,D176
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.24.0420153 SKDGPSPKDA0.998unspLmjF.24.0420153 SKDGPSPKDA0.998unspLmjF.24.0420153 SKDGPSPKDA0.998unspLmjF.24.042031 SVKGVSVEDL0.997unspLmjF.24.0420126 SEMRGSLLDS0.991unsp

LmjF.24.0420      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India