LmjF.25.0190 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.25.0190OTHER0.9992860.0002410.000473
No Results

  • Fasta :-

    >LmjF.25.0190 MWFPLESNPQVMNRYISTLGLTEAKVEFVDVYGVSGDLLEMVPSPVHALLLVYPICEATE RRLAEQQAAQTEEVAALRQAHPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILD GPWVNAAKTSEDPKIIGKLIAEDTSLASAHAAAAQEGATANQHIDADINLHFVCFIPVGG RCVELDGRKENPTLHGSCTDNKSFLTAAAAAIQERIELNPSSYEFGITALVNK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/633 Sequence name : 633 Sequence length : 233 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.844 ChDiff : -12 ZoneTo : 22 KR : 1 DE : 1 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.129 1.318 0.050 0.568 MesoH : -0.501 0.358 -0.374 0.234 MuHd_075 : 21.669 17.222 5.243 5.590 MuHd_095 : 26.373 17.887 7.345 6.593 MuHd_100 : 24.006 16.366 6.164 6.145 MuHd_105 : 20.703 15.039 4.843 6.427 Hmax_075 : 15.900 14.933 2.582 4.790 Hmax_095 : 6.913 8.000 -0.374 3.780 Hmax_100 : 8.100 8.000 -0.472 4.060 Hmax_105 : 7.438 12.950 1.769 4.069 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8106 0.1894 DFMC : 0.8838 0.1162
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 233 LmjF.25.0190 MWFPLESNPQVMNRYISTLGLTEAKVEFVDVYGVSGDLLEMVPSPVHALLLVYPICEATERRLAEQQAAQTEEVAALRQA 80 HPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILDGPWVNAAKTSEDPKIIGKLIAEDTSLASAHAAAAQEGATA 160 NQHIDADINLHFVCFIPVGGRCVELDGRKENPTLHGSCTDNKSFLTAAAAAIQERIELNPSSYEFGITALVNK 240 ................................................................................ 80 ................................................................................ 160 ......................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.25.0190 14 NPQVMNR|YI 0.194 . LmjF.25.0190 25 LGLTEAK|VE 0.057 . LmjF.25.0190 61 ICEATER|RL 0.083 . LmjF.25.0190 62 CEATERR|LA 0.276 . LmjF.25.0190 78 EEVAALR|QA 0.110 . LmjF.25.0190 107 HALMNNR|DK 0.092 . LmjF.25.0190 109 LMNNRDK|LG 0.072 . LmjF.25.0190 128 PWVNAAK|TS 0.061 . LmjF.25.0190 134 KTSEDPK|II 0.085 . LmjF.25.0190 138 DPKIIGK|LI 0.060 . LmjF.25.0190 181 FIPVGGR|CV 0.091 . LmjF.25.0190 188 CVELDGR|KE 0.074 . LmjF.25.0190 189 VELDGRK|EN 0.061 . LmjF.25.0190 202 GSCTDNK|SF 0.077 . LmjF.25.0190 215 AAAIQER|IE 0.068 . LmjF.25.0190 233 ITALVNK|-- 0.068 . ____________________________^_________________

  • Fasta :-

    >LmjF.25.0190 ATGTGGTTCCCGCTGGAGAGCAATCCGCAGGTGATGAACCGCTACATCAGCACCTTGGGT CTCACAGAAGCGAAGGTGGAGTTTGTGGACGTGTACGGGGTGTCAGGCGATCTACTTGAA ATGGTGCCTTCGCCGGTGCACGCCCTGCTCCTCGTGTACCCCATATGTGAGGCCACAGAG AGACGCCTAGCGGAGCAGCAGGCTGCACAGACAGAGGAAGTTGCGGCGCTTCGCCAAGCA CACCCTTTTTTCTTCACACACCAGCTCGTTCCGAACGCGTGCGGAACCATCGCCATTGCG CATGCTCTCATGAACAACCGCGATAAGCTCGGTGAGATCGCCGCCGGCAGCATCCTCGAC GGCCCGTGGGTGAACGCGGCAAAAACGTCGGAAGATCCCAAGATCATAGGGAAACTGATT GCGGAAGACACGAGTCTCGCCAGCGCTCACGCCGCTGCTGCACAGGAGGGCGCGACCGCC AACCAGCACATCGACGCGGACATCAACCTTCACTTTGTCTGCTTCATCCCCGTAGGCGGA CGCTGCGTTGAACTGGATGGGCGAAAAGAAAACCCGACCTTGCACGGTAGCTGCACCGAC AACAAATCTTTCCTCACCGCTGCAGCCGCCGCCATACAGGAACGCATAGAGCTCAACCCC AGCTCCTACGAGTTTGGCATCACCGCACTCGTGAACAAGTGA
  • Download Fasta

  • Fasta :-

    MWFPLESNPQVMNRYISTLGLTEAKVEFVDVYGVSGDLLEMVPSPVHALLLVYPICEATE RRLAEQQAAQTEEVAALRQAHPFFFTHQLVPNACGTIAIAHALMNNRDKLGEIAAGSILD GPWVNAAKTSEDPKIIGKLIAEDTSLASAHAAAAQEGATANQHIDADINLHFVCFIPVGG RCVELDGRKENPTLHGSCTDNKSFLTAAAAAIQERIELNPSSYEFGITALVNK

  • title: catalytic site
  • coordinates: Q88,C94,H171,D186
No Results
No Results
No Results

LmjF.25.0190      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India