LmjF.27.0190 | proteasome alpha 7 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.27.0190OTHER0.9999640.0000340.000002
No Results

  • Fasta :-

    >LmjF.27.0190 MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLE KGSNNRIHAVDRQAGICICGLLPDGRAIVSRARQEAENSRDIFATPIRGSVLANRVGEFM HVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGYYGVALGKAKTVAKSELEKLD FSNLTCDDAVVKLANILHDVHDKQKDKLYDVEVAWVCDKSDRKFVHVAADMIPSETSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/469 Sequence name : 469 Sequence length : 238 VALUES OF COMPUTED PARAMETERS Coef20 : 3.240 CoefTot : -0.736 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.712 1.359 0.228 0.448 MesoH : -0.291 0.268 -0.274 0.238 MuHd_075 : 30.036 10.993 7.198 2.691 MuHd_095 : 16.624 3.616 2.966 1.703 MuHd_100 : 14.115 3.895 1.635 1.876 MuHd_105 : 12.975 6.319 1.465 2.434 Hmax_075 : 9.275 4.900 0.533 2.788 Hmax_095 : 8.100 1.200 -1.176 2.290 Hmax_100 : 8.100 1.200 -1.176 2.290 Hmax_105 : 3.900 2.500 -0.687 2.077 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9885 0.0115 DFMC : 0.9817 0.0183
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 238 LmjF.27.0190 MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLEKGSNNRIHAVDRQAGICICG 80 LLPDGRAIVSRARQEAENSRDIFATPIRGSVLANRVGEFMHVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGY 160 YGVALGKAKTVAKSELEKLDFSNLTCDDAVVKLANILHDVHDKQKDKLYDVEVAWVCDKSDRKFVHVAADMIPSETSN 240 ................................................................................ 80 ................................................................................ 160 .............................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.27.0190 20 VFSAEGR|VF 0.087 . LmjF.27.0190 29 QVEYAGK|AV 0.077 . LmjF.27.0190 43 AVAACCK|DG 0.063 . LmjF.27.0190 52 VVVAVEK|IH 0.055 . LmjF.27.0190 57 EKIHTSR|ML 0.123 . LmjF.27.0190 61 TSRMLEK|GS 0.087 . LmjF.27.0190 66 EKGSNNR|IH 0.074 . LmjF.27.0190 72 RIHAVDR|QA 0.175 . LmjF.27.0190 86 GLLPDGR|AI 0.085 . LmjF.27.0190 91 GRAIVSR|AR 0.158 . LmjF.27.0190 93 AIVSRAR|QE 0.074 . LmjF.27.0190 100 QEAENSR|DI 0.114 . LmjF.27.0190 108 IFATPIR|GS 0.080 . LmjF.27.0190 115 GSVLANR|VG 0.076 . LmjF.27.0190 130 TTHFAYR|PF 0.121 . LmjF.27.0190 167 YGVALGK|AK 0.061 . LmjF.27.0190 169 VALGKAK|TV 0.085 . LmjF.27.0190 173 KAKTVAK|SE 0.086 . LmjF.27.0190 178 AKSELEK|LD 0.066 . LmjF.27.0190 192 CDDAVVK|LA 0.061 . LmjF.27.0190 203 LHDVHDK|QK 0.071 . LmjF.27.0190 205 DVHDKQK|DK 0.066 . LmjF.27.0190 207 HDKQKDK|LY 0.072 . LmjF.27.0190 219 VAWVCDK|SD 0.074 . LmjF.27.0190 222 VCDKSDR|KF 0.081 . LmjF.27.0190 223 CDKSDRK|FV 0.136 . ____________________________^_________________

  • Fasta :-

    >LmjF.27.0190 ATGGCGGGCACAGGCAGCGGTCACGATCAGTCGACGGACGTCTTCTCGGCCGAAGGTCGC GTGTTCCAGGTGGAGTACGCCGGCAAGGCTGTCGACAACAGCAGCACCGCCGTTGCGGCG TGCTGCAAGGACGGCGTTGTGGTTGCGGTAGAAAAGATTCACACGAGCCGTATGCTGGAG AAAGGCTCGAACAACCGTATCCACGCCGTGGACCGCCAGGCCGGCATTTGCATCTGCGGT CTTCTCCCGGACGGGCGCGCGATTGTCTCTCGCGCGCGGCAAGAGGCGGAGAATAGTCGC GACATTTTCGCCACCCCCATCCGTGGTTCAGTGCTGGCCAATCGCGTGGGGGAGTTCATG CATGTGTACACCACCCACTTTGCGTACCGCCCTTTCGGGTGCTCGGCCATCATCGCGTCG TATGCTGATGACGGGCCGCAGCTGTTCGTTAGCGATCCCAGCGGCACGGTGGCCGGGTAC TACGGCGTTGCGCTCGGCAAGGCCAAGACAGTGGCAAAGAGCGAGCTGGAGAAGCTCGAC TTCTCCAACCTCACTTGCGACGATGCGGTAGTGAAGCTGGCCAACATCCTTCACGATGTG CACGACAAGCAGAAGGACAAACTTTATGACGTGGAAGTTGCGTGGGTCTGCGACAAGTCG GATCGCAAGTTTGTTCACGTGGCGGCTGATATGATTCCATCGGAAACGTCGAACTGA
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  • Fasta :-

    MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLE KGSNNRIHAVDRQAGICICGLLPDGRAIVSRARQEAENSRDIFATPIRGSVLANRVGEFM HVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGYYGVALGKAKTVAKSELEKLD FSNLTCDDAVVKLANILHDVHDKQKDKLYDVEVAWVCDKSDRKFVHVAADMIPSETSN

  • title: active site
  • coordinates: S35,E51,I53,R66,K167
No Results
No Results
No Results

LmjF.27.0190      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India