LmjF.27.1270 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.27.1270OTHER0.9998870.0000090.000104
No Results

  • Fasta :-

    >LmjF.27.1270 MIEEIDRREPERRRIVAQQLESDRGDGDGNKQLSRAVDMHLTRQQQLLSSENSSVDELLQ RLRYASVPGTRNITPGIVSNGPPAPSPMYTTVSRPEPSPAPVNPAPADNHALPASASHRS YTTCILNPSNAFLSVRRRGIVNLGNTCYMNSVLQVLNSTPLGQYFLTDTYVSYLLNTKGK LTRLINSFSFVIRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIH GALNVNDSNRIEFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQERSAVVCPSCD HQSRSFNISLSIEIPIPRTLSKVSLDDCFAAYCREEILDNSSMYMCPNCHQKVNARKQLL FYSAPPVLFITLKRFRCYGDFTTASKVNSSVFFSKTLDIASYMCSGFSKTKYHLVGIINH QGNMYGGHYTADAVGADGVWCHFSDEQVTKADVADNNLAYILCYVR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/190 Sequence name : 190 Sequence length : 466 VALUES OF COMPUTED PARAMETERS Coef20 : 4.074 CoefTot : 0.000 ChDiff : 0 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.741 1.159 -0.009 0.435 MesoH : -0.265 0.252 -0.307 0.196 MuHd_075 : 45.951 25.552 11.177 10.722 MuHd_095 : 22.299 16.987 6.206 4.572 MuHd_100 : 26.301 21.478 7.804 6.098 MuHd_105 : 22.575 19.355 6.843 5.891 Hmax_075 : -9.333 2.683 -3.638 2.240 Hmax_095 : -13.912 4.725 -3.875 0.892 Hmax_100 : -19.300 3.500 -4.564 0.380 Hmax_105 : -10.033 11.317 -1.816 2.403 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8181 0.1819 DFMC : 0.9272 0.0728
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 466 LmjF.27.1270 MIEEIDRREPERRRIVAQQLESDRGDGDGNKQLSRAVDMHLTRQQQLLSSENSSVDELLQRLRYASVPGTRNITPGIVSN 80 GPPAPSPMYTTVSRPEPSPAPVNPAPADNHALPASASHRSYTTCILNPSNAFLSVRRRGIVNLGNTCYMNSVLQVLNSTP 160 LGQYFLTDTYVSYLLNTKGKLTRLINSFSFVIRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIH 240 GALNVNDSNRIEFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQERSAVVCPSCDHQSRSFNISLSIEIPIPRTL 320 SKVSLDDCFAAYCREEILDNSSMYMCPNCHQKVNARKQLLFYSAPPVLFITLKRFRCYGDFTTASKVNSSVFFSKTLDIA 400 SYMCSGFSKTKYHLVGIINHQGNMYGGHYTADAVGADGVWCHFSDEQVTKADVADNNLAYILCYVR 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.27.1270 7 MIEEIDR|RE 0.065 . LmjF.27.1270 8 IEEIDRR|EP 0.098 . LmjF.27.1270 12 DRREPER|RR 0.094 . LmjF.27.1270 13 RREPERR|RI 0.214 . LmjF.27.1270 14 REPERRR|IV 0.223 . LmjF.27.1270 24 QQLESDR|GD 0.115 . LmjF.27.1270 31 GDGDGNK|QL 0.077 . LmjF.27.1270 35 GNKQLSR|AV 0.155 . LmjF.27.1270 43 VDMHLTR|QQ 0.068 . LmjF.27.1270 61 VDELLQR|LR 0.077 . LmjF.27.1270 63 ELLQRLR|YA 0.091 . LmjF.27.1270 71 ASVPGTR|NI 0.108 . LmjF.27.1270 94 MYTTVSR|PE 0.067 . LmjF.27.1270 119 PASASHR|SY 0.192 . LmjF.27.1270 136 NAFLSVR|RR 0.089 . LmjF.27.1270 137 AFLSVRR|RG 0.095 . LmjF.27.1270 138 FLSVRRR|GI 0.228 . LmjF.27.1270 178 SYLLNTK|GK 0.055 . LmjF.27.1270 180 LLNTKGK|LT 0.073 . LmjF.27.1270 183 TKGKLTR|LI 0.089 . LmjF.27.1270 193 SFSFVIR|EL 0.110 . LmjF.27.1270 197 VIRELNR|SD 0.104 . LmjF.27.1270 201 LNRSDCK|FS 0.066 . LmjF.27.1270 210 VSASPFK|SA 0.082 . LmjF.27.1270 233 DANEFLR|VV 0.148 . LmjF.27.1270 250 NVNDSNR|IE 0.105 . LmjF.27.1270 260 PEIDNSK|GT 0.075 . LmjF.27.1270 268 TDDELAR|RY 0.089 . LmjF.27.1270 269 DDELARR|YW 0.160 . LmjF.27.1270 277 WGQYYQK|NS 0.069 . LmjF.27.1270 291 YCAFQER|SA 0.153 . LmjF.27.1270 304 SCDHQSR|SF 0.165 . LmjF.27.1270 318 IEIPIPR|TL 0.091 . LmjF.27.1270 322 IPRTLSK|VS 0.062 . LmjF.27.1270 334 CFAAYCR|EE 0.067 . LmjF.27.1270 352 CPNCHQK|VN 0.070 . LmjF.27.1270 356 HQKVNAR|KQ 0.074 . LmjF.27.1270 357 QKVNARK|QL 0.073 . LmjF.27.1270 373 VLFITLK|RF 0.060 . LmjF.27.1270 374 LFITLKR|FR 0.204 . LmjF.27.1270 376 ITLKRFR|CY 0.107 . LmjF.27.1270 386 DFTTASK|VN 0.060 . LmjF.27.1270 395 SSVFFSK|TL 0.075 . LmjF.27.1270 409 MCSGFSK|TK 0.072 . LmjF.27.1270 411 SGFSKTK|YH 0.067 . LmjF.27.1270 450 SDEQVTK|AD 0.066 . LmjF.27.1270 466 YILCYVR|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LmjF.27.1270 TTTGACTATAAGATTTCCTATGACGAATTTGTCAGAACAATTTATCATCATGCACGTCAG TACGAGATAAAAGTTTCCGATCCTCACAAGCAATGCGTCACTGTCAATGCGCTCATCACA AAAGCCAAGGACGAAGAGAGCAAACGAAACTACGCCAATGCGTACTACTACGTCAACAAG TGCCTTTTATTTTTTGATAAGGAAGAGAACCCGGTTGACTTCACGCAAAGAGATCCATCT ACAAAGAGGGTCTTTGCTGAGGCTCTTGACCTTGAGGCTAAGTTGAAGCTGAAGGAGCTG CCGATCGAGTACAAGACTATGATCGAAGAAATCGACCGTCGGGAGCCGGAGCGCCGTCGC ATCGTAGCCCAGCAGCTAGAGTCGGACAGAGGAGATGGTGACGGGAACAAGCAGCTTTCG AGGGCGGTAGACATGCACTTGACAAGACAGCAGCAACTGCTGTCTTCCGAGAACAGCAGC GTCGATGAGTTGTTGCAGCGGCTGCGCTATGCTTCGGTGCCTGGCACGAGGAACATTACC CCGGGCATAGTTTCCAATGGCCCGCCTGCTCCTTCTCCAATGTACACTACCGTCTCCAGA CCCGAACCATCTCCAGCGCCAGTAAATCCCGCGCCAGCCGACAACCACGCTCTCCCTGCC TCAGCCTCACATAGAAGCTACACAACCTGTATCCTGAATCCTTCAAATGCCTTTCTGTCC GTGCGACGGAGAGGAATTGTAAATTTGGGCAACACGTGCTACATGAATAGTGTGCTGCAG GTACTCAATTCCACGCCGTTAGGTCAGTACTTTCTTACTGACACCTATGTTTCCTACCTG CTCAATACAAAGGGAAAGCTGACTCGCTTGATCAACTCATTTAGCTTCGTTATCCGTGAG CTCAATCGTTCCGACTGCAAGTTTTCAGTGAGCGCGTCGCCGTTCAAGTCTGCCCTCGGC GACTACTACGAAGGGTTTCAAAACTCAAGCCAGCAGGACGCAAACGAGTTTCTACGTGTT GTGCTGGACGGCATTCACGGAGCACTGAATGTGAACGACAGTAATAGAATCGAGTTTCCT GAGATTGACAATTCTAAGGGCACCGATGACGAACTTGCTCGACGCTACTGGGGGCAATAC TATCAGAAGAATTCGTCTGTTATAGTTGACTACTGCGCGTTTCAAGAGAGGAGCGCGGTT GTCTGCCCCTCCTGTGACCACCAGTCACGCTCCTTCAATATTTCTCTTAGCATTGAAATT CCTATTCCGCGGACCTTGTCAAAGGTTTCACTGGACGACTGCTTTGCCGCGTACTGCCGG GAGGAAATTCTTGACAATAGCTCGATGTACATGTGCCCTAACTGTCACCAGAAGGTGAAC GCCCGCAAGCAGCTGCTGTTTTATTCAGCACCACCAGTTCTATTTATTACTCTGAAGCGT TTCCGCTGTTACGGTGACTTCACCACCGCCTCAAAAGTCAACTCGAGCGTTTTCTTTAGT AAAACACTGGACATTGCCTCGTATATGTGCTCCGGATTCTCGAAAACGAAGTACCATTTG GTGGGTATTATCAATCACCAAGGCAACATGTATGGCGGTCACTATACTGCAGATGCTGTT GGTGCTGATGGCGTGTGGTGCCACTTCAGCGATGAGCAGGTGACAAAAGCGGACGTGGCC GATAATAATCTGGCCTACATTCTCTGCTACGTACGTTGA
  • Download Fasta

  • Fasta :-

    MIEEIDRREPERRRIVAQQLESDRGDGDGNKQLSRAVDMHLTRQQQLLSSENSSVDELLQ RLRYASVPGTRNITPGIVSNGPPAPSPMYTTVSRPEPSPAPVNPAPADNHALPASASHRS YTTCILNPSNAFLSVRRRGIVNLGNTCYMNSVLQVLNSTPLGQYFLTDTYVSYLLNTKGK LTRLINSFSFVIRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIH GALNVNDSNRIEFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQERSAVVCPSCD HQSRSFNISLSIEIPIPRTLSKVSLDDCFAAYCREEILDNSSMYMCPNCHQKVNARKQLL FYSAPPVLFITLKRFRCYGDFTTASKVNSSVFFSKTLDIASYMCSGFSKTKYHLVGIINH QGNMYGGHYTADAVGADGVWCHFSDEQVTKADVADNNLAYILCYVR

  • title: Active Site
  • coordinates: N142,C147,H428,D445
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.27.1270324 SLSKVSLDDC0.99unspLmjF.27.1270324 SLSKVSLDDC0.99unspLmjF.27.1270324 SLSKVSLDDC0.99unspLmjF.27.127054 SSENSSVDEL0.99unspLmjF.27.127066 SLRYASVPGT0.993unsp

LmjF.27.1270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India