LmjF.28.0570 | major surface protease gp63, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.28.0570SP0.0013500.9986250.000026CS pos: 24-25. GAA-QG. Pr: 0.4532
No Results

  • Fasta :-

    >LmjF.28.0570 MCRTLLGIAVAFALVCCVVGPGAAQGHPERADSEEPRCGFDELEAHTIGTRVSGISRVEL PTGELVVAAAATGALQPIRIAVFTDDISNSSQHCTASGQSRPNFRGSRVTCSAAEVLTRA KKRVLLELLIPSAVQLHQERLNVQRVNGNIVVDSSIQKDRVCGQFSIREEHMKTGVKDAD FVLYMSAAPTSGSVIAWALKCQNFDNGRPSVGVVNISPKYIAADPKTVRVIAHEVLHALG FSRSVFQERNMLAMASFRSKGPSPVICSEKVVAKAQQHYGCKTQAFMELEDTGDIDDASS HWKRRNAKDELMAGFSGVGIYSALTIAAMEDTGYYQGNYAKAEPMAYGHDAGCKLSSDQC VTNSTSQIPGMFCDAPDAPWSCTSDRLGVGRCILTSHKSNLPTYFQYFSDPRLGGPDPLM DFCPVVEVAEGTMCAATTNALKGSVYGVMSRCVDTPVGFSMDDSAVRQHGICVEVQCDST KYYIKANGASAFCDCPPGSTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSGFL TDHSVAGVLTSVKAVVAVLLVVLFMV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/66 Sequence name : 66 Sequence length : 566 VALUES OF COMPUTED PARAMETERS Coef20 : 4.843 CoefTot : -0.694 ChDiff : -6 ZoneTo : 28 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.212 2.682 0.635 0.813 MesoH : 0.347 0.810 -0.086 0.355 MuHd_075 : 15.105 14.682 3.914 4.439 MuHd_095 : 17.132 10.867 5.392 3.014 MuHd_100 : 17.762 9.828 4.848 4.095 MuHd_105 : 19.996 14.664 4.164 5.336 Hmax_075 : 19.833 21.800 6.895 7.080 Hmax_095 : 18.800 22.000 6.417 6.600 Hmax_100 : 19.200 23.800 7.296 6.810 Hmax_105 : 19.200 26.200 6.424 7.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9544 0.0456 DFMC : 0.9739 0.0261
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 566 LmjF.28.0570 MCRTLLGIAVAFALVCCVVGPGAAQGHPERADSEEPRCGFDELEAHTIGTRVSGISRVELPTGELVVAAAATGALQPIRI 80 AVFTDDISNSSQHCTASGQSRPNFRGSRVTCSAAEVLTRAKKRVLLELLIPSAVQLHQERLNVQRVNGNIVVDSSIQKDR 160 VCGQFSIREEHMKTGVKDADFVLYMSAAPTSGSVIAWALKCQNFDNGRPSVGVVNISPKYIAADPKTVRVIAHEVLHALG 240 FSRSVFQERNMLAMASFRSKGPSPVICSEKVVAKAQQHYGCKTQAFMELEDTGDIDDASSHWKRRNAKDELMAGFSGVGI 320 YSALTIAAMEDTGYYQGNYAKAEPMAYGHDAGCKLSSDQCVTNSTSQIPGMFCDAPDAPWSCTSDRLGVGRCILTSHKSN 400 LPTYFQYFSDPRLGGPDPLMDFCPVVEVAEGTMCAATTNALKGSVYGVMSRCVDTPVGFSMDDSAVRQHGICVEVQCDST 480 KYYIKANGASAFCDCPPGSTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSGFLTDHSVAGVLTSVKAVVAVLL 560 VVLFMV 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.28.0570 3 ----MCR|TL 0.086 . LmjF.28.0570 30 AQGHPER|AD 0.106 . LmjF.28.0570 37 ADSEEPR|CG 0.147 . LmjF.28.0570 51 AHTIGTR|VS 0.077 . LmjF.28.0570 57 RVSGISR|VE 0.074 . LmjF.28.0570 79 GALQPIR|IA 0.082 . LmjF.28.0570 101 TASGQSR|PN 0.129 . LmjF.28.0570 105 QSRPNFR|GS 0.100 . LmjF.28.0570 108 PNFRGSR|VT 0.182 . LmjF.28.0570 119 AAEVLTR|AK 0.092 . LmjF.28.0570 121 EVLTRAK|KR 0.052 . LmjF.28.0570 122 VLTRAKK|RV 0.221 . LmjF.28.0570 123 LTRAKKR|VL 0.185 . LmjF.28.0570 140 VQLHQER|LN 0.073 . LmjF.28.0570 145 ERLNVQR|VN 0.113 . LmjF.28.0570 158 VDSSIQK|DR 0.073 . LmjF.28.0570 160 SSIQKDR|VC 0.109 . LmjF.28.0570 168 CGQFSIR|EE 0.084 . LmjF.28.0570 173 IREEHMK|TG 0.067 . LmjF.28.0570 177 HMKTGVK|DA 0.086 . LmjF.28.0570 200 VIAWALK|CQ 0.055 . LmjF.28.0570 208 QNFDNGR|PS 0.083 . LmjF.28.0570 219 VVNISPK|YI 0.083 . LmjF.28.0570 226 YIAADPK|TV 0.086 . LmjF.28.0570 229 ADPKTVR|VI 0.083 . LmjF.28.0570 243 HALGFSR|SV 0.256 . LmjF.28.0570 249 RSVFQER|NM 0.081 . LmjF.28.0570 258 LAMASFR|SK 0.223 . LmjF.28.0570 260 MASFRSK|GP 0.104 . LmjF.28.0570 270 PVICSEK|VV 0.083 . LmjF.28.0570 274 SEKVVAK|AQ 0.075 . LmjF.28.0570 282 QQHYGCK|TQ 0.060 . LmjF.28.0570 303 DASSHWK|RR 0.069 . LmjF.28.0570 304 ASSHWKR|RN 0.286 . LmjF.28.0570 305 SSHWKRR|NA 0.421 . LmjF.28.0570 308 WKRRNAK|DE 0.225 . LmjF.28.0570 341 YQGNYAK|AE 0.062 . LmjF.28.0570 354 GHDAGCK|LS 0.067 . LmjF.28.0570 386 WSCTSDR|LG 0.069 . LmjF.28.0570 391 DRLGVGR|CI 0.106 . LmjF.28.0570 398 CILTSHK|SN 0.066 . LmjF.28.0570 412 QYFSDPR|LG 0.078 . LmjF.28.0570 442 ATTNALK|GS 0.060 . LmjF.28.0570 451 VYGVMSR|CV 0.117 . LmjF.28.0570 467 MDDSAVR|QH 0.089 . LmjF.28.0570 481 VQCDSTK|YY 0.075 . LmjF.28.0570 485 STKYYIK|AN 0.075 . LmjF.28.0570 512 LSPSFSK|GY 0.060 . LmjF.28.0570 527 ESVCAIK|IN 0.058 . LmjF.28.0570 553 GVLTSVK|AV 0.073 . ____________________________^_________________

  • Fasta :-

    >LmjF.28.0570 ATGTGCCGCACGCTGTTGGGGATCGCGGTGGCCTTTGCGTTGGTGTGTTGTGTTGTCGGC CCTGGCGCGGCGCAGGGGCACCCGGAGCGAGCCGACTCAGAGGAGCCGCGCTGCGGGTTT GACGAGCTGGAGGCGCACACGATCGGCACCCGCGTGAGTGGGATAAGCCGTGTAGAACTG CCTACCGGGGAGCTTGTGGTTGCGGCTGCCGCAACGGGGGCCTTGCAGCCCATCCGTATT GCCGTCTTCACAGATGACATCTCGAACAGCAGCCAGCACTGCACCGCTTCGGGCCAGAGT CGGCCCAACTTCCGCGGCAGCAGAGTTACTTGCAGCGCAGCGGAAGTTCTCACGAGAGCA AAGAAACGGGTCCTGTTGGAACTGCTGATTCCATCCGCAGTACAGCTACACCAAGAGCGG CTGAACGTGCAGCGGGTGAATGGCAACATCGTTGTTGACTCCTCCATCCAGAAAGACCGC GTCTGCGGTCAGTTCAGCATACGCGAAGAGCACATGAAGACTGGCGTAAAGGACGCCGAC TTTGTTCTGTACATGTCTGCTGCGCCAACATCTGGCAGCGTCATCGCGTGGGCGCTGAAG TGTCAGAACTTCGACAATGGCCGCCCGTCCGTGGGCGTGGTGAACATCTCACCCAAGTAC ATCGCCGCCGACCCGAAGACCGTGCGCGTCATCGCGCACGAGGTGTTGCACGCACTCGGC TTCTCGAGGTCAGTTTTTCAGGAACGGAACATGTTAGCGATGGCGTCCTTTCGAAGCAAG GGCCCCTCACCTGTCATTTGCAGTGAGAAGGTGGTTGCCAAGGCGCAGCAACATTACGGC TGCAAAACGCAGGCTTTCATGGAGCTGGAAGACACGGGTGACATCGACGACGCTTCCTCA CACTGGAAGCGCCGCAACGCCAAAGACGAGCTGATGGCGGGCTTCAGCGGCGTTGGCATC TACTCGGCGCTCACCATTGCCGCCATGGAGGACACGGGCTACTACCAGGGTAACTACGCC AAGGCGGAGCCGATGGCGTACGGTCACGATGCGGGTTGCAAACTGAGCTCCGATCAGTGC GTCACCAACAGTACTTCACAGATTCCTGGCATGTTTTGCGATGCCCCCGACGCTCCGTGG AGTTGCACGTCTGATCGCCTAGGCGTCGGGAGGTGCATCCTTACCTCTCACAAGTCGAAC CTGCCGACCTATTTTCAATACTTCAGCGACCCGAGGCTGGGTGGCCCGGATCCCCTGATG GACTTCTGCCCGGTTGTGGAGGTTGCCGAAGGCACCATGTGCGCCGCTACAACAAACGCC CTGAAGGGCAGCGTGTATGGTGTAATGTCGCGCTGTGTCGACACGCCGGTAGGTTTTTCC ATGGATGACTCGGCGGTCCGGCAGCATGGCATCTGCGTTGAGGTGCAGTGCGACAGCACC AAGTACTACATCAAAGCAAATGGCGCGTCTGCGTTCTGCGATTGTCCGCCTGGCAGCACT TACAACCTGTCGACATTGAGCCCGTCCTTCTCTAAAGGGTATTTGGTGTGCCCTTCTTAT GAGTCCGTGTGCGCCATCAAGATAAACGCTTCCCTGTACGAAGAATACAGTGGGTTTCTC ACCGACCACAGCGTCGCTGGTGTGCTGACAAGTGTGAAGGCGGTGGTTGCGGTGCTTCTG GTGGTGCTTTTCATGGTCTGA
  • Download Fasta

  • Fasta :-

    MCRTLLGIAVAFALVCCVVGPGAAQGHPERADSEEPRCGFDELEAHTIGTRVSGISRVEL PTGELVVAAAATGALQPIRIAVFTDDISNSSQHCTASGQSRPNFRGSRVTCSAAEVLTRA KKRVLLELLIPSAVQLHQERLNVQRVNGNIVVDSSIQKDRVCGQFSIREEHMKTGVKDAD FVLYMSAAPTSGSVIAWALKCQNFDNGRPSVGVVNISPKYIAADPKTVRVIAHEVLHALG FSRSVFQERNMLAMASFRSKGPSPVICSEKVVAKAQQHYGCKTQAFMELEDTGDIDDASS HWKRRNAKDELMAGFSGVGIYSALTIAAMEDTGYYQGNYAKAEPMAYGHDAGCKLSSDQC VTNSTSQIPGMFCDAPDAPWSCTSDRLGVGRCILTSHKSNLPTYFQYFSDPRLGGPDPLM DFCPVVEVAEGTMCAATTNALKGSVYGVMSRCVDTPVGFSMDDSAVRQHGICVEVQCDST KYYIKANGASAFCDCPPGSTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSGFL TDHSVAGVLTSVKAVVAVLLVVLFMV

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.28.0570460 SPVGFSMDDS0.995unspLmjF.28.0570460 SPVGFSMDDS0.995unspLmjF.28.0570460 SPVGFSMDDS0.995unspLmjF.28.057033 SERADSEEPR0.996unspLmjF.28.057056 SVSGISRVEL0.99unsp

LmjF.28.0570      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India