LmjF.28.2800 | beta-lactamase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.28.2800OTHER0.9999500.0000260.000024
No Results

  • Fasta :-

    >LmjF.28.2800 MSDAPDAAAARPRLRIDFPPVKDNEELVKKQRAAVAQDEIRDDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPITAAYICELHGKGIFDLETPLIQYLPELQGKLSEDVTARSVLSFIHGIDDAHLLKDA GARWHRPCFSPSLCAETHARVYEPVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR NFTRSLHRAYISHTSVALLLAAVETQLKGHSFESDIRTVFFEPAQSHGTGYGAPTLWKDP NELFYQPTGQALQHETFKRPVAIADPRNCSPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGIDALPAVASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM KQQKFTSYFTKYEAHRRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/712 Sequence name : 712 Sequence length : 498 VALUES OF COMPUTED PARAMETERS Coef20 : 3.849 CoefTot : 0.112 ChDiff : 4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.447 1.312 0.298 0.570 MesoH : -0.641 0.333 -0.347 0.229 MuHd_075 : 18.583 10.366 4.419 3.444 MuHd_095 : 18.020 5.284 3.948 2.365 MuHd_100 : 20.839 7.190 4.241 1.879 MuHd_105 : 19.634 7.861 3.426 1.794 Hmax_075 : 12.950 12.133 1.633 4.993 Hmax_095 : 10.900 8.600 1.006 4.140 Hmax_100 : 9.900 6.000 0.620 3.340 Hmax_105 : 2.400 9.400 -0.762 2.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9344 0.0656 DFMC : 0.9076 0.0924
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 498 LmjF.28.2800 MSDAPDAAAARPRLRIDFPPVKDNEELVKKQRAAVAQDEIRDDMEKDIPPVIRSVLELSHLTMSGHSQWLRAAPGYQGGL 80 FHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTLSLPITAAYICELHGKGIFDLETPLIQYLPELQGKLSEDVT 160 ARSVLSFIHGIDDAHLLKDAGARWHRPCFSPSLCAETHARVYEPVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR 240 NFTRSLHRAYISHTSVALLLAAVETQLKGHSFESDIRTVFFEPAQSHGTGYGAPTLWKDPNELFYQPTGQALQHETFKRP 320 VAIADPRNCSPAVWNGSLNLYAPVEDYGKLLLLSLDTIMDARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGI 400 DALPAVASFRYSCEHDLGCFGVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM 480 KQQKFTSYFTKYEAHRRY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.28.2800 11 PDAAAAR|PR 0.075 . LmjF.28.2800 13 AAAARPR|LR 0.100 . LmjF.28.2800 15 AARPRLR|ID 0.086 . LmjF.28.2800 22 IDFPPVK|DN 0.070 . LmjF.28.2800 29 DNEELVK|KQ 0.065 . LmjF.28.2800 30 NEELVKK|QR 0.091 . LmjF.28.2800 32 ELVKKQR|AA 0.122 . LmjF.28.2800 41 VAQDEIR|DD 0.091 . LmjF.28.2800 46 IRDDMEK|DI 0.085 . LmjF.28.2800 53 DIPPVIR|SV 0.152 . LmjF.28.2800 71 GHSQWLR|AA 0.145 . LmjF.28.2800 83 QGGLFHK|GK 0.064 . LmjF.28.2800 85 GLFHKGK|PF 0.071 . LmjF.28.2800 94 CFASGYR|DT 0.123 . LmjF.28.2800 98 GYRDTSR|PL 0.115 . LmjF.28.2800 105 PLDAEDK|GN 0.067 . LmjF.28.2800 110 DKGNHMK|LK 0.071 . LmjF.28.2800 112 GNHMKLK|DP 0.087 . LmjF.28.2800 135 ICELHGK|GI 0.084 . LmjF.28.2800 154 LPELQGK|LS 0.073 . LmjF.28.2800 162 SEDVTAR|SV 0.208 . LmjF.28.2800 178 DDAHLLK|DA 0.085 . LmjF.28.2800 183 LKDAGAR|WH 0.094 . LmjF.28.2800 186 AGARWHR|PC 0.148 . LmjF.28.2800 200 CAETHAR|VY 0.112 . LmjF.28.2800 207 VYEPVNR|FL 0.097 . LmjF.28.2800 225 LTGQQQR|AN 0.083 . LmjF.28.2800 233 NLVQYVR|SS 0.117 . LmjF.28.2800 237 YVRSSPR|IT 0.093 . LmjF.28.2800 240 SSPRITR|NF 0.275 . LmjF.28.2800 244 ITRNFTR|SL 0.195 . LmjF.28.2800 248 FTRSLHR|AY 0.082 . LmjF.28.2800 268 AVETQLK|GH 0.056 . LmjF.28.2800 277 SFESDIR|TV 0.100 . LmjF.28.2800 298 GAPTLWK|DP 0.064 . LmjF.28.2800 318 LQHETFK|RP 0.060 . LmjF.28.2800 319 QHETFKR|PV 0.256 . LmjF.28.2800 327 VAIADPR|NC 0.098 . LmjF.28.2800 349 PVEDYGK|LL 0.057 . LmjF.28.2800 362 DTIMDAR|EL 0.081 . LmjF.28.2800 367 ARELLGK|PS 0.069 . LmjF.28.2800 374 PSNASGR|PY 0.132 . LmjF.28.2800 387 VQYVPSK|DH 0.068 . LmjF.28.2800 394 DHLQLTK|SV 0.096 . LmjF.28.2800 410 PAVASFR|YS 0.099 . LmjF.28.2800 428 VASCGSR|GA 0.108 . LmjF.28.2800 431 CGSRGAR|FF 0.364 . LmjF.28.2800 439 FVNNLSR|II 0.090 . LmjF.28.2800 447 IQHLFVK|HV 0.088 . LmjF.28.2800 452 VKHVLAK|GL 0.098 . LmjF.28.2800 458 KGLDPEK|PV 0.066 . LmjF.28.2800 468 LDDPAQK|GK 0.077 . LmjF.28.2800 470 DPAQKGK|ET 0.085 . LmjF.28.2800 478 TEETLQR|MM 0.101 . LmjF.28.2800 481 TLQRMMK|QQ 0.105 . LmjF.28.2800 484 RMMKQQK|FT 0.084 . LmjF.28.2800 491 FTSYFTK|YE 0.073 . LmjF.28.2800 496 TKYEAHR|RY 0.091 . LmjF.28.2800 497 KYEAHRR|Y- 0.154 . ____________________________^_________________

  • Fasta :-

    >LmjF.28.2800 ATGTCCGACGCGCCCGACGCTGCAGCCGCCAGACCGCGGCTGCGCATCGACTTTCCTCCC GTCAAGGACAATGAGGAACTCGTCAAGAAGCAACGCGCCGCCGTCGCTCAGGACGAAATT CGTGACGACATGGAAAAAGACATTCCACCAGTCATCCGTAGTGTGTTGGAGCTGTCGCAT CTGACTATGAGCGGTCACAGCCAGTGGTTGCGTGCTGCACCTGGCTACCAGGGTGGTCTC TTCCACAAGGGCAAGCCCTTCTGCTTTGCCAGTGGGTACCGAGACACCAGCCGTCCACTA GATGCCGAAGATAAGGGCAACCACATGAAGCTCAAGGACCCGCTCGTGTACGGCACCTTA TCGCTGCCAATAACGGCTGCCTACATATGCGAGCTGCACGGTAAGGGCATCTTCGACCTG GAAACGCCTCTGATCCAGTACCTACCAGAGCTCCAGGGCAAGCTCAGCGAGGACGTCACC GCCCGCAGCGTGCTCTCCTTCATCCATGGCATCGACGACGCACATCTGCTCAAGGATGCG GGAGCGCGCTGGCATCGGCCGTGCTTCTCTCCGTCGCTGTGCGCCGAGACGCACGCTCGC GTGTACGAGCCAGTAAATCGGTTTCTGGCCGGTGGCACGACGCCCGCAACGGCGCTGACA GGGCAGCAGCAGCGAGCGAACCTCGTCCAGTACGTCCGCTCCTCACCTCGCATCACTCGC AACTTTACGCGATCGCTTCACCGGGCCTACATCAGCCACACCTCCGTGGCCCTGCTGCTG GCTGCGGTGGAGACGCAGCTGAAGGGCCACAGTTTCGAGAGCGACATCCGCACCGTCTTC TTCGAGCCCGCGCAAAGCCACGGCACTGGCTACGGCGCACCAACGTTGTGGAAGGACCCG AACGAGCTCTTCTACCAACCCACAGGTCAGGCTCTGCAACACGAGACCTTCAAGCGGCCG GTGGCCATCGCCGACCCGCGCAACTGTAGTCCTGCGGTGTGGAACGGCTCGCTGAACCTC TACGCCCCCGTCGAGGACTACGGCAAGCTGCTGCTGCTCTCGCTCGACACCATCATGGAC GCCCGCGAGCTGCTCGGCAAGCCGTCTAACGCTAGCGGGCGCCCCTACTACGACTTTGGG GTGCAGTACGTGCCATCCAAGGACCATCTGCAGCTGACGAAGTCAGTCTTGTACGGCATC GATGCCCTCCCTGCCGTCGCGTCCTTCCGCTACAGCTGCGAGCACGACCTCGGCTGCTTC GGCGTCGCCTCCTGCGGCAGCCGCGGCGCTCGTTTCTTTGTGAACAACCTCTCCCGCATC ATTCAGCACCTGTTCGTGAAGCACGTGCTGGCCAAAGGGCTCGACCCTGAGAAACCCGTC AACCTCGACGACCCCGCGCAGAAGGGCAAGGAGACCGAGGAGACTCTCCAGCGAATGATG AAGCAGCAGAAGTTTACGAGCTACTTCACGAAGTACGAGGCGCACAGGCGGTACTGA
  • Download Fasta

  • Fasta :-

    MSDAPDAAAARPRLRIDFPPVKDNEELVKKQRAAVAQDEIRDDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPITAAYICELHGKGIFDLETPLIQYLPELQGKLSEDVTARSVLSFIHGIDDAHLLKDA GARWHRPCFSPSLCAETHARVYEPVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR NFTRSLHRAYISHTSVALLLAAVETQLKGHSFESDIRTVFFEPAQSHGTGYGAPTLWKDP NELFYQPTGQALQHETFKRPVAIADPRNCSPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGIDALPAVASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM KQQKFTSYFTKYEAHRRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.28.280096 TGYRDTSRPL0.994unspLmjF.28.2800235 SYVRSSPRIT0.997unsp

LmjF.28.2800      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India