LmjF.29.0910 | signal peptide peptidase, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.29.0910OTHER0.9215480.0767410.001712
No Results

  • Fasta :-

    >LmjF.29.0910 MSQICIALTFLVTCAITAVAVGALRCRKVMMKGKSDIALQTDEALSIPLNGSVILFSVYV SLRFIPKEYFNILISFYLSLISVFALHMFVKGYIKPNIVTGLICVGTGCASFFAQNWIAS NILAFSIAVTALERLPVNGFTTSFILLIGLFFYDIFWVFGSDVMLIVATSIDGPIKLVFP QTIFGDCSKKSLLGLGDIIVPGLFICQTLVFSKDYVKRGSLYFVTSMVAYTLSLVNTMAV MLIFQHGQPALLFIVPWLLVTFSAVAVYNGDVKAAWSFDILSVFTISSEESAPGDPHAEQ EVSLSTFVCEAALDLFGFAKEDSAAESKTAESKEKKEA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/510 Sequence name : 510 Sequence length : 338 VALUES OF COMPUTED PARAMETERS Coef20 : 5.072 CoefTot : 0.571 ChDiff : -4 ZoneTo : 35 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.282 2.494 0.615 0.925 MesoH : 1.111 1.368 0.097 0.561 MuHd_075 : 21.087 17.857 6.798 5.099 MuHd_095 : 23.131 15.614 7.890 5.443 MuHd_100 : 25.561 16.382 8.689 5.334 MuHd_105 : 25.343 14.045 8.326 5.438 Hmax_075 : 16.700 13.900 3.847 4.500 Hmax_095 : 14.800 24.100 4.078 7.040 Hmax_100 : 15.300 25.500 4.328 5.150 Hmax_105 : 15.138 18.300 4.806 5.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1810 0.8190 DFMC : 0.2717 0.7283 This protein is probably imported in mitochondria. f(Ser) = 0.0571 f(Arg) = 0.0571 CMi = 0.38095 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 338 LmjF.29.0910 MSQICIALTFLVTCAITAVAVGALRCRKVMMKGKSDIALQTDEALSIPLNGSVILFSVYVSLRFIPKEYFNILISFYLSL 80 ISVFALHMFVKGYIKPNIVTGLICVGTGCASFFAQNWIASNILAFSIAVTALERLPVNGFTTSFILLIGLFFYDIFWVFG 160 SDVMLIVATSIDGPIKLVFPQTIFGDCSKKSLLGLGDIIVPGLFICQTLVFSKDYVKRGSLYFVTSMVAYTLSLVNTMAV 240 MLIFQHGQPALLFIVPWLLVTFSAVAVYNGDVKAAWSFDILSVFTISSEESAPGDPHAEQEVSLSTFVCEAALDLFGFAK 320 EDSAAESKTAESKEKKEA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.29.0910 25 VAVGALR|CR 0.068 . LmjF.29.0910 27 VGALRCR|KV 0.124 . LmjF.29.0910 28 GALRCRK|VM 0.195 . LmjF.29.0910 32 CRKVMMK|GK 0.088 . LmjF.29.0910 34 KVMMKGK|SD 0.101 . LmjF.29.0910 63 SVYVSLR|FI 0.110 . LmjF.29.0910 67 SLRFIPK|EY 0.077 . LmjF.29.0910 91 ALHMFVK|GY 0.072 . LmjF.29.0910 95 FVKGYIK|PN 0.057 . LmjF.29.0910 134 AVTALER|LP 0.069 . LmjF.29.0910 176 SIDGPIK|LV 0.076 . LmjF.29.0910 189 IFGDCSK|KS 0.061 . LmjF.29.0910 190 FGDCSKK|SL 0.128 . LmjF.29.0910 213 QTLVFSK|DY 0.064 . LmjF.29.0910 217 FSKDYVK|RG 0.057 . LmjF.29.0910 218 SKDYVKR|GS 0.203 . LmjF.29.0910 273 VYNGDVK|AA 0.062 . LmjF.29.0910 320 DLFGFAK|ED 0.079 . LmjF.29.0910 328 DSAAESK|TA 0.077 . LmjF.29.0910 333 SKTAESK|EK 0.063 . LmjF.29.0910 335 TAESKEK|KE 0.066 . LmjF.29.0910 336 AESKEKK|EA 0.159 . ____________________________^_________________

  • Fasta :-

    >LmjF.29.0910 ATGTCGCAGATTTGCATTGCTCTCACTTTTTTGGTCACGTGCGCAATCACCGCAGTGGCG GTAGGGGCGCTTCGGTGCAGGAAGGTGATGATGAAAGGGAAATCTGACATTGCACTCCAA ACAGACGAGGCGCTGTCAATTCCTTTGAATGGCTCTGTCATTCTGTTCTCGGTGTACGTT TCCTTGCGCTTTATTCCGAAGGAATACTTCAACATCCTGATTTCCTTCTATCTTAGCTTG ATTAGCGTCTTCGCTCTTCACATGTTCGTGAAAGGGTATATCAAGCCCAATATTGTCACC GGACTGATCTGCGTAGGAACCGGGTGCGCCAGCTTTTTTGCTCAGAACTGGATCGCAAGC AACATACTGGCCTTTTCTATCGCCGTCACAGCTCTTGAAAGGCTTCCTGTGAATGGGTTC ACGACCTCTTTCATTCTGCTGATTGGCCTCTTCTTCTACGACATCTTCTGGGTATTTGGG TCGGACGTCATGCTGATCGTGGCGACCAGCATCGATGGACCAATAAAACTCGTGTTTCCT CAGACGATCTTTGGCGACTGCTCCAAGAAAAGCCTCCTTGGACTCGGTGACATCATTGTG CCTGGCCTTTTTATATGCCAAACACTGGTGTTCTCGAAGGACTATGTGAAGAGGGGAAGT CTGTACTTTGTCACGTCGATGGTCGCGTACACCCTGAGTCTTGTGAACACTATGGCTGTT ATGCTGATTTTCCAACATGGCCAGCCAGCGCTCCTCTTCATTGTACCATGGCTTCTCGTC ACATTCTCTGCTGTCGCTGTGTACAACGGGGATGTCAAGGCGGCATGGAGCTTTGATATT CTTAGTGTCTTCACAATCTCTTCAGAGGAGTCAGCGCCGGGTGACCCGCATGCAGAACAG GAGGTATCCCTCTCCACGTTTGTCTGCGAGGCTGCTTTGGACCTTTTCGGATTTGCAAAG GAGGATTCGGCGGCGGAGAGCAAGACGGCGGAGTCGAAGGAGAAGAAGGAGGCGTAG
  • Download Fasta

  • Fasta :-

    MSQICIALTFLVTCAITAVAVGALRCRKVMMKGKSDIALQTDEALSIPLNGSVILFSVYV SLRFIPKEYFNILISFYLSLISVFALHMFVKGYIKPNIVTGLICVGTGCASFFAQNWIAS NILAFSIAVTALERLPVNGFTTSFILLIGLFFYDIFWVFGSDVMLIVATSIDGPIKLVFP QTIFGDCSKKSLLGLGDIIVPGLFICQTLVFSKDYVKRGSLYFVTSMVAYTLSLVNTMAV MLIFQHGQPALLFIVPWLLVTFSAVAVYNGDVKAAWSFDILSVFTISSEESAPGDPHAEQ EVSLSTFVCEAALDLFGFAKEDSAAESKTAESKEKKEA

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.29.0910287 SVFTISSEES0.992unspLmjF.29.0910332 SKTAESKEKK0.995unsp

LmjF.29.0910      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India