LmjF.29.1570 | glutamamyl carboxypeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.29.1570OTHER0.9973110.0011380.001551
No Results

  • Fasta :-

    >LmjF.29.1570 MSYPATFREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATL PGENGVMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLTMNRVKPVHYAFSFDEEVGCTGVPYLIEHLKARGFLADACLIGEPTDMNVYVGSKG FTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRENGRQDPEYACPFPC ITTGLIKGGNAVNTVPAQCEFVVTVRITDSETPDAIERRVRAYVNDHVLPAMREEYPDAE VTVTRSLAMPAFNGKEAASVTQKALMLRKATQTYKTGGGTEGGYFEDVLGVSTVIVGPGP KAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/55 Sequence name : 55 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.349 CoefTot : -0.022 ChDiff : -9 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.453 1.429 0.119 0.574 MesoH : -0.249 0.467 -0.296 0.265 MuHd_075 : 44.865 20.737 10.298 7.189 MuHd_095 : 11.606 10.059 4.503 4.400 MuHd_100 : 10.615 11.198 3.365 4.462 MuHd_105 : 14.373 13.176 3.069 4.604 Hmax_075 : 16.683 12.950 1.618 5.623 Hmax_095 : 5.162 9.900 -0.148 5.270 Hmax_100 : 5.300 9.200 -0.148 5.070 Hmax_105 : 14.300 10.700 0.736 6.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6914 0.3086 DFMC : 0.7005 0.2995
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LmjF.29.1570 MSYPATFREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATLPGENGVMQGGIVLSGHTDVV 80 PVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALTPQFLTMNRVKPVHYAFSFDEEVGCTGVPYLIEHLKARGFL 160 ADACLIGEPTDMNVYVGSKGFTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRENGRQDPEYACPFPC 240 ITTGLIKGGNAVNTVPAQCEFVVTVRITDSETPDAIERRVRAYVNDHVLPAMREEYPDAEVTVTRSLAMPAFNGKEAASV 320 TQKALMLRKATQTYKTGGGTEGGYFEDVLGVSTVIVGPGPKAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGN 400 L 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.29.1570 8 SYPATFR|EW 0.088 . LmjF.29.1570 13 FREWLAK|II 0.080 . LmjF.29.1570 22 SFDTTSR|NS 0.065 . LmjF.29.1570 33 PMVEYVR|DY 0.086 . LmjF.29.1570 37 YVRDYLK|SV 0.114 . LmjF.29.1570 51 FVYNPEK|TH 0.056 . LmjF.29.1570 86 VPVDGQK|WD 0.067 . LmjF.29.1570 97 PFTMVEK|DG 0.061 . LmjF.29.1570 100 MVEKDGK|LF 0.073 . LmjF.29.1570 104 DGKLFGR|GA 0.138 . LmjF.29.1570 110 RGACDMK|GF 0.069 . LmjF.29.1570 128 QFLTMNR|VK 0.062 . LmjF.29.1570 130 LTMNRVK|PV 0.085 . LmjF.29.1570 155 YLIEHLK|AR 0.064 . LmjF.29.1570 157 IEHLKAR|GF 0.108 . LmjF.29.1570 179 NVYVGSK|GF 0.059 . LmjF.29.1570 191 SVSVQGK|AI 0.101 . LmjF.29.1570 216 AAQIITK|VR 0.066 . LmjF.29.1570 218 QIITKVR|EI 0.093 . LmjF.29.1570 225 EIAVDLR|EN 0.101 . LmjF.29.1570 229 DLRENGR|QD 0.074 . LmjF.29.1570 247 ITTGLIK|GG 0.062 . LmjF.29.1570 266 EFVVTVR|IT 0.088 . LmjF.29.1570 278 TPDAIER|RV 0.119 . LmjF.29.1570 279 PDAIERR|VR 0.125 . LmjF.29.1570 281 AIERRVR|AY 0.166 . LmjF.29.1570 293 HVLPAMR|EE 0.068 . LmjF.29.1570 305 AEVTVTR|SL 0.112 . LmjF.29.1570 315 MPAFNGK|EA 0.074 . LmjF.29.1570 323 AASVTQK|AL 0.069 . LmjF.29.1570 328 QKALMLR|KA 0.113 . LmjF.29.1570 329 KALMLRK|AT 0.085 . LmjF.29.1570 335 KATQTYK|TG 0.068 . LmjF.29.1570 361 IVGPGPK|AM 0.057 . LmjF.29.1570 378 LVDQMEK|ST 0.068 . LmjF.29.1570 388 FTMALVR|LY 0.065 . ____________________________^_________________

  • Fasta :-

    >LmjF.29.1570 ATGTCCTACCCGGCGACGTTTCGCGAGTGGCTGGCAAAGATCATCAGCTTCGACACGACG AGTCGCAACTCGAACTTGCCGATGGTGGAGTACGTGCGCGACTACCTGAAGTCCGTCGGC GTTGCGTCGACGTTCGTGTACAACCCGGAGAAGACGCATGCCAACCTGTGGGCGACGCTG CCCGGCGAGAACGGCGTGATGCAGGGCGGCATCGTGCTTTCAGGCCACACGGACGTTGTG CCGGTGGATGGGCAGAAGTGGGACAGCGACCCGTTCACAATGGTGGAGAAGGACGGCAAG CTGTTTGGCCGCGGAGCCTGCGACATGAAGGGCTTCCTGGCGGTTGTGCTGGCGCTGACG CCACAGTTCCTGACAATGAATCGTGTGAAGCCCGTGCACTACGCCTTCTCATTCGACGAG GAGGTGGGCTGCACCGGCGTGCCCTACTTGATCGAACATCTGAAGGCGCGTGGGTTCCTG GCGGACGCCTGCCTCATCGGTGAACCGACGGACATGAACGTTTACGTTGGTTCGAAGGGC TTTACTCAGTGGAGCGTATCTGTGCAGGGAAAGGCGATTCACTCGTCAATGGCGCTCATG AACACAAGCTGCAACGCGATCGAGTACGCTGCGCAGATCATCACAAAGGTGCGCGAGATC GCTGTGGACCTGCGCGAGAACGGCCGCCAGGACCCTGAATACGCATGTCCGTTCCCCTGT ATCACAACTGGGCTGATCAAGGGCGGCAATGCTGTGAACACGGTCCCTGCGCAGTGCGAA TTTGTGGTCACTGTGCGCATCACCGACAGCGAGACACCGGACGCCATTGAGCGGCGTGTG CGTGCGTACGTGAACGATCACGTGCTGCCTGCAATGCGTGAGGAGTACCCCGATGCTGAG GTAACGGTGACGCGTTCGTTGGCCATGCCGGCCTTTAACGGCAAAGAGGCTGCTTCTGTG ACGCAGAAAGCCTTGATGCTCCGGAAGGCTACACAGACGTACAAGACGGGTGGTGGCACG GAGGGCGGCTACTTTGAGGACGTCCTGGGTGTTTCAACCGTGATTGTGGGTCCGGGCCCT AAGGCGATGGCGCATCTGCCGAACGAATATGTGCTCGTGGACCAGATGGAAAAAAGCACT GAGTTCACGATGGCCCTGGTGCGGCTGTACACGGACCCGAGCTACTGCGGTGCCGGCAAC CTGTAA
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  • Fasta :-

    MSYPATFREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATL PGENGVMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLTMNRVKPVHYAFSFDEEVGCTGVPYLIEHLKARGFLADACLIGEPTDMNVYVGSKG FTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRENGRQDPEYACPFPC ITTGLIKGGNAVNTVPAQCEFVVTVRITDSETPDAIERRVRAYVNDHVLPAMREEYPDAE VTVTRSLAMPAFNGKEAASVTQKALMLRKATQTYKTGGGTEGGYFEDVLGVSTVIVGPGP KAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL

  • title: metal binding site
  • coordinates: H76,D108,E140,E141,E168,H365
No Results
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No Results

LmjF.29.1570      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India