LmjF.29.2770 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
LmjF.29.2770OTHER0.8290680.1214760.049456
No Results

  • Fasta :-

    >LmjF.29.2770 MRTHGLAVVPSIVQPSPFLIRAICALYWKDTFLGSCVAIAPSIVVTAGHHYNAVRDDVGD FSVLTRPGHWAAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVIESEAERCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNTRDGSRVSGF IPSRKLVSLFAEMWVEHARVLSSA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/162 Sequence name : 162 Sequence length : 204 VALUES OF COMPUTED PARAMETERS Coef20 : 3.940 CoefTot : -1.105 ChDiff : -3 ZoneTo : 55 KR : 4 DE : 1 CleavSite : 57 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.865 1.847 0.430 0.660 MesoH : -0.100 0.585 -0.210 0.300 MuHd_075 : 29.285 20.515 6.278 7.608 MuHd_095 : 27.138 23.177 9.028 6.670 MuHd_100 : 25.359 24.485 8.947 7.261 MuHd_105 : 26.935 26.375 9.309 8.266 Hmax_075 : 17.700 17.500 3.940 6.520 Hmax_095 : 13.913 24.325 3.838 6.000 Hmax_100 : 14.800 24.900 4.935 7.320 Hmax_105 : 15.400 18.300 4.511 6.160 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4144 0.5856 DFMC : 0.5827 0.4173
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 204 LmjF.29.2770 MRTHGLAVVPSIVQPSPFLIRAICALYWKDTFLGSCVAIAPSIVVTAGHHYNAVRDDVGDFSVLTRPGHWAAVEYASKDS 80 TYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPPHDAIVSPGVVIESEAERCVARGTVSMTGSSGAPVVDVFGE 160 HIVGLHLTSNTRDGSRVSGFIPSRKLVSLFAEMWVEHARVLSSA 240 ................................................................................ 80 ................................................................................ 160 ............................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.29.2770 2 -----MR|TH 0.089 . LmjF.29.2770 21 PSPFLIR|AI 0.087 . LmjF.29.2770 29 ICALYWK|DT 0.068 . LmjF.29.2770 55 HHYNAVR|DD 0.097 . LmjF.29.2770 66 DFSVLTR|PG 0.091 . LmjF.29.2770 78 AVEYASK|DS 0.063 . LmjF.29.2770 100 TTHTSLR|GY 0.125 . LmjF.29.2770 118 TVWLSPK|PP 0.073 . LmjF.29.2770 137 IESEAER|CV 0.159 . LmjF.29.2770 141 AERCVAR|GT 0.121 . LmjF.29.2770 172 HLTSNTR|DG 0.085 . LmjF.29.2770 176 NTRDGSR|VS 0.082 . LmjF.29.2770 184 SGFIPSR|KL 0.075 . LmjF.29.2770 185 GFIPSRK|LV 0.104 . LmjF.29.2770 199 MWVEHAR|VL 0.114 . ____________________________^_________________

  • Fasta :-

    >LmjF.29.2770 ATGAGGACACATGGACTCGCTGTGGTGCCGTCCATTGTGCAACCCTCTCCGTTCCTCATT CGCGCCATTTGCGCCCTTTACTGGAAAGACACTTTTCTTGGCAGCTGTGTGGCCATCGCC CCGTCGATTGTGGTGACTGCGGGCCACCACTACAACGCCGTCCGCGACGATGTCGGCGAC TTCAGCGTGTTGACACGGCCCGGGCACTGGGCGGCGGTCGAGTATGCGTCAAAGGATAGC ACGTATGACGTTGTGGTGTTCTGGCTCTGCGAGGAAGTGACGACGCACACCTCGCTGCGA GGGTATCTGCCCGCGGTGGGGGCACAGGTGGCGACTGTATGGTTGTCCCCTAAGCCCCCA CACGACGCGATTGTGTCGCCAGGCGTCGTGATCGAGAGTGAGGCAGAGAGGTGCGTGGCG CGCGGCACTGTGAGCATGACCGGATCGAGCGGCGCACCTGTGGTGGACGTCTTTGGTGAG CACATTGTCGGTCTCCATCTCACGTCCAACACGCGGGACGGCTCACGTGTGTCTGGGTTC ATACCGTCACGCAAGCTGGTCTCTCTTTTCGCCGAGATGTGGGTCGAGCACGCTCGCGTA TTGTCTTCGGCATAG
  • Download Fasta

  • Fasta :-

    MRTHGLAVVPSIVQPSPFLIRAICALYWKDTFLGSCVAIAPSIVVTAGHHYNAVRDDVGD FSVLTRPGHWAAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVIESEAERCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNTRDGSRVSGF IPSRKLVSLFAEMWVEHARVLSSA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.29.277080 SASKDSTYDV0.992unsp

LmjF.29.2770      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India