LmjF.30.0270 | AUT2/APG4/ATG4 cysteine peptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:  GO:0008234      

  • Curated_GO_Functions:  cysteine-type peptidase activity      

  • Curated_GO_Processes:  autophagosome assembly      

_IDPredictionOTHERSPmTPCS_Position
LmjF.30.0270OTHER0.9529220.0174640.029614
No Results

  • Fasta :-

    >LmjF.30.0270 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWN RRVFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTSTNGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLCEGLSAAASVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVESQQTQRDCDHLGGARPGHADSTFVSPLQMGHSCAMGGASISETAPLVHRRTLRLPR KRFKEGGVGTATAAAAERDDGEDELDTDSWEYLD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/456 Sequence name : 456 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.054 CoefTot : -0.055 ChDiff : -9 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.129 1.724 0.195 0.563 MesoH : -0.250 0.403 -0.263 0.215 MuHd_075 : 18.028 6.958 3.859 2.504 MuHd_095 : 25.048 13.759 3.790 6.250 MuHd_100 : 24.693 15.341 4.983 6.064 MuHd_105 : 31.753 21.611 7.824 7.160 Hmax_075 : 11.783 9.800 0.183 5.355 Hmax_095 : 10.938 11.287 -0.555 5.189 Hmax_100 : 14.600 12.500 1.705 5.310 Hmax_105 : 18.400 14.900 1.572 5.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8126 0.1874 DFMC : 0.9038 0.0962
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 LmjF.30.0270 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAVTRLIETDQGWGCLLRTSQML 80 LAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWNRRVFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTS 160 TNGCIYADEVQHTFKQGADVVLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH 240 QRTAAALLCEGLSAAASVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRFMHVESQQTQRDCDHLGGARP 320 GHADSTFVSPLQMGHSCAMGGASISETAPLVHRRTLRLPRKRFKEGGVGTATAAAAERDDGEDELDTDSWEYLD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.30.0270 3 ----MLR|YV 0.127 . LmjF.30.0270 26 PLQVVGR|SG 0.192 . LmjF.30.0270 34 GAAVESR|EE 0.085 . LmjF.30.0270 39 SREELEK|AL 0.072 . LmjF.30.0270 51 FLIFTYR|DG 0.115 . LmjF.30.0270 62 AIPAVTR|LI 0.093 . LmjF.30.0270 75 GWGCLLR|TS 0.084 . LmjF.30.0270 90 FLWVHGR|PA 0.148 . LmjF.30.0270 94 HGRPADR|KL 0.100 . LmjF.30.0270 95 GRPADRK|LS 0.076 . LmjF.30.0270 116 SIHNMIR|SV 0.246 . LmjF.30.0270 121 IRSVWNR|RV 0.318 . LmjF.30.0270 122 RSVWNRR|VF 0.134 . LmjF.30.0270 125 WNRRVFK|AE 0.162 . LmjF.30.0270 139 QGCEAIK|RT 0.062 . LmjF.30.0270 140 GCEAIKR|TV 0.281 . LmjF.30.0270 147 TVQGAVK|TE 0.057 . LmjF.30.0270 154 TEQLQTR|VM 0.079 . LmjF.30.0270 175 EVQHTFK|QG 0.067 . LmjF.30.0270 188 LVLASVR|VS 0.077 . LmjF.30.0270 205 SYLQIEK|LM 0.055 . LmjF.30.0270 222 VGGVPGR|SY 0.107 . LmjF.30.0270 242 YLDPHQR|TA 0.096 . LmjF.30.0270 266 PSVADVR|CV 0.132 . LmjF.30.0270 272 RCVHWSR|VD 0.074 . LmjF.30.0270 286 AFAVTTR|DE 0.117 . LmjF.30.0270 299 EVHLSNR|FM 0.116 . LmjF.30.0270 310 ESQQTQR|DC 0.137 . LmjF.30.0270 319 DHLGGAR|PG 0.069 . LmjF.30.0270 353 TAPLVHR|RT 0.068 . LmjF.30.0270 354 APLVHRR|TL 0.131 . LmjF.30.0270 357 VHRRTLR|LP 0.192 . LmjF.30.0270 360 RTLRLPR|KR 0.204 . LmjF.30.0270 361 TLRLPRK|RF 0.097 . LmjF.30.0270 362 LRLPRKR|FK 0.353 . LmjF.30.0270 364 LPRKRFK|EG 0.090 . LmjF.30.0270 378 TAAAAER|DD 0.142 . ____________________________^_________________

  • Fasta :-

    >LmjF.30.0270 ATGCTCCGCTACGTGCAAGATTTATGGAGCGCCTTTTTCCCCACGGAGGCGGTCTTTCCA CTCCAAGTCGTCGGCAGGTCTGGCGCTGCCGTGGAATCGCGAGAGGAGTTAGAGAAGGCA CTCACCGACACATTTCTCATCTTCACGTACCGGGACGGCTTCGAGGCGATCCCGGCCGTC ACGCGCCTGATCGAGACAGACCAGGGATGGGGCTGCCTTCTGCGCACCTCGCAGATGCTT CTGGCTCATTTCTTGTGGGTCCATGGCCGTCCAGCGGATCGCAAACTTTCTCTTTTCTTC GACCACAGTGCCGAGACGGCGCCGTTCTCGATCCACAACATGATCCGAAGTGTATGGAAT CGGCGGGTGTTCAAGGCGGAGTACTGGAGCCCATCGCAGGGCTGCGAGGCCATCAAGCGC ACGGTGCAGGGTGCCGTAAAGACGGAGCAGCTGCAGACGCGCGTGATGGTGGTGACGTCC ACAAACGGGTGCATCTACGCTGACGAGGTGCAGCACACCTTCAAGCAGGGGGCGGATGTG GTGCTCGTCTTGGCCTCTGTGCGCGTGAGTGCGGCGGCGCAGCTGACGCAGGAGAGCTAC CTCCAGATAGAAAAGCTGATGGAGCAGCCGCAGTGTCTGGGGGTTGTCGGCGGAGTACCG GGACGGAGTTACTACTTCTTTGCTCACAACCAAACACAGCTCTTCTACCTGGACCCGCAC CAGCGAACGGCTGCCGCGCTGCTGTGTGAGGGGCTGTCCGCCGCGGCCTCTGTCACGCCA TCCGTCGCCGATGTGCGTTGTGTACATTGGTCACGCGTGGACACATCGCTGTTTCTCGCC TTCGCCGTTACAACACGCGATGAGTGGGCCGCGCTGGAGGTGCATCTCTCTAACAGATTC ATGCACGTCGAATCGCAGCAGACGCAGCGCGACTGCGATCATCTCGGGGGTGCGCGGCCG GGTCACGCCGACAGCACCTTTGTGTCCCCGCTGCAGATGGGCCATAGTTGTGCGATGGGC GGCGCGTCGATTTCCGAGACGGCACCACTAGTACACCGACGTACGCTGCGGTTACCTCGC AAGAGGTTCAAGGAGGGCGGGGTAGGCACTGCCACCGCTGCTGCAGCGGAGAGGGATGAT GGTGAAGACGAGCTCGACACGGATTCGTGGGAGTATCTGGATTGA
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  • Fasta :-

    MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALTDTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWN RRVFKAEYWSPSQGCEAIKRTVQGAVKTEQLQTRVMVVTSTNGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLCEGLSAAASVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVESQQTQRDCDHLGGARPGHADSTFVSPLQMGHSCAMGGASISETAPLVHRRTLRLPR KRFKEGGVGTATAAAAERDDGEDELDTDSWEYLD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.30.027033 SAAVESREEL0.995unsp

LmjF.30.0270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India