LmjF.30.0750 | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.30.0750OTHER0.9997030.0002690.000028
No Results

  • Fasta :-

    >LmjF.30.0750 MHVLVVAADHSEDIELISITDVLSRAAIKVTLASVMESKSITLAHGVNVMCDALIGEVSG VEYDAVLLPGGMPGAVHLGNSEALKKILQNARAGKKLYGGICAAPAVALAPMGLLEGVDT VTCYPGFEDKLPSSVKHSTKAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHSNEMNDVRAIK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/797 Sequence name : 797 Sequence length : 196 VALUES OF COMPUTED PARAMETERS Coef20 : 3.807 CoefTot : 0.165 ChDiff : -3 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.771 1.712 0.377 0.677 MesoH : -0.064 0.799 -0.187 0.337 MuHd_075 : 8.507 1.852 0.700 0.828 MuHd_095 : 12.500 1.830 3.377 0.643 MuHd_100 : 20.831 9.033 5.855 2.500 MuHd_105 : 28.050 15.337 7.788 4.168 Hmax_075 : 2.537 9.450 -1.778 3.700 Hmax_095 : 6.650 10.500 -0.098 4.060 Hmax_100 : 10.600 15.200 1.343 5.040 Hmax_105 : 15.200 18.200 2.730 6.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9846 0.0154 DFMC : 0.9670 0.0330
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 196 LmjF.30.0750 MHVLVVAADHSEDIELISITDVLSRAAIKVTLASVMESKSITLAHGVNVMCDALIGEVSGVEYDAVLLPGGMPGAVHLGN 80 SEALKKILQNARAGKKLYGGICAAPAVALAPMGLLEGVDTVTCYPGFEDKLPSSVKHSTKAVVKSENCLTSRGPGTAIYF 160 ALAVVSILKSPDLAERLAKAMLVDHSNEMNDVRAIK 240 ................................................................................ 80 ................................................................................ 160 .................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.30.0750 25 ITDVLSR|AA 0.109 . LmjF.30.0750 29 LSRAAIK|VT 0.068 . LmjF.30.0750 39 ASVMESK|SI 0.081 . LmjF.30.0750 85 GNSEALK|KI 0.073 . LmjF.30.0750 86 NSEALKK|IL 0.104 . LmjF.30.0750 92 KILQNAR|AG 0.079 . LmjF.30.0750 95 QNARAGK|KL 0.188 . LmjF.30.0750 96 NARAGKK|LY 0.105 . LmjF.30.0750 130 YPGFEDK|LP 0.067 . LmjF.30.0750 136 KLPSSVK|HS 0.067 . LmjF.30.0750 140 SVKHSTK|AV 0.127 . LmjF.30.0750 144 STKAVVK|SE 0.070 . LmjF.30.0750 152 ENCLTSR|GP 0.103 . LmjF.30.0750 169 AVVSILK|SP 0.069 . LmjF.30.0750 176 SPDLAER|LA 0.100 . LmjF.30.0750 179 LAERLAK|AM 0.108 . LmjF.30.0750 193 NEMNDVR|AI 0.100 . LmjF.30.0750 196 NDVRAIK|-- 0.130 . ____________________________^_________________

  • Fasta :-

    >LmjF.30.0750 ATGCATGTTCTTGTCGTCGCGGCTGATCACTCCGAGGACATCGAGCTGATCAGTATTACT GACGTCCTCTCTCGCGCTGCCATCAAGGTAACACTCGCTTCTGTGATGGAGTCAAAGTCC ATTACGCTGGCGCACGGAGTGAATGTGATGTGTGATGCTCTGATTGGAGAAGTCTCTGGA GTCGAATACGACGCGGTACTCCTTCCCGGCGGCATGCCAGGAGCCGTCCATCTCGGCAAC AGCGAAGCGCTGAAGAAGATTCTGCAGAATGCTCGGGCGGGTAAAAAACTGTACGGCGGA ATCTGCGCTGCTCCCGCCGTCGCCCTTGCTCCTATGGGACTGCTGGAGGGTGTGGATACC GTCACTTGCTACCCCGGCTTTGAGGATAAGCTGCCCTCTTCTGTCAAGCACTCCACGAAA GCTGTTGTGAAGTCAGAGAACTGTCTCACCAGCCGCGGCCCCGGCACCGCCATTTACTTT GCGCTCGCCGTTGTTTCGATCCTCAAGTCACCTGATCTGGCTGAGAGGCTCGCCAAGGCC ATGCTTGTGGATCACAGCAACGAGATGAACGACGTGCGCGCCATCAAGTAA
  • Download Fasta

  • Fasta :-

    MHVLVVAADHSEDIELISITDVLSRAAIKVTLASVMESKSITLAHGVNVMCDALIGEVSG VEYDAVLLPGGMPGAVHLGNSEALKKILQNARAGKKLYGGICAAPAVALAPMGLLEGVDT VTCYPGFEDKLPSSVKHSTKAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHSNEMNDVRAIK

  • title: conserved cys residue
  • coordinates: C102
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.30.0750134 SKLPSSVKHS0.994unspLmjF.30.0750138 SSVKHSTKAV0.994unsp

LmjF.30.0750      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India